Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01538 ATGGGTATTCTTAGCACTGCTCTGGGATTTTGTGGATTTGGAGTTGGAACATCGATTGGGATTGTGGTTGGTTATTACATGTTCATCTACTTCCAGCCAACTGATGTTAAGGATCCCGTTGTTCGCCCTCTGGTCGAGCATGATTCGAAGACATTGCAACAATTAATGCCGGAAATGCCTTTGTGGGTCAAAAATCCTGACTATGATCGGGTTGACTGGCTGAACAAATTCATCGAAAATATGTGGCCTTACCTCGACAAGGCAATTTGCAAGATGGTGAGGAACATAGCAAAACCCATTATTGCTGAGCAAATTCCTAAATACAAAATTGATTCAGTCGAGTTTGAAACACTTACATTGGGCTCGTTACCACCAACTTTTCAAGGAATGAAAGTTTATTCAACTGATGAAAAGGAACTGATCACGGAGCTATTAATGAAGTGGGCGGGAAATCCGAACATCATTATTGGTGTGAAAGCATTTGGATTGAAGGCCACTGTTCAGGTGGTTGATCTGCAAGTTTTTGCTGCACCTCGGATAACGCTCAAGCCTTTGGTTCCGACATTTCCTTGTTTTGCAAAAATATTAGTCTCTCTCATGGAGAAGTATTGCCTACATTTGATGAAGAGATTTCAAGCACCACACGTGGACTTTGGTCTAAAATTACTCGGAGCCGACGCAATGTCAATTCCTGGCCTGTACAGGTTTGTTCAGGAGCTCATTAAAGATCAAGTTGCCAATATGTATTTGTGGCCGAAGACCCTCGAAGTGCCAATAATGGATCCTGCAAAGGCCATGAAAAAACCAGTTGGAATTCTTAACGTGAAGGTTTTGAGGGCGGTGAAGCTGAAAAAGAAAGATCTTTTTGGTTTATCTGACCCGTACGTCAAGCTGAAGCTCACCGAGGAAAACCTTCCTGCAAAGAAAACAACTGTAAAGCACAGTAATTTGAACCCAGAATGGAACGAGGAATTTCATTTTGTTGTTAAGGATCCAGAATCTCAAGCCTTCGAACTCATCGTCTACGATTGGGATCAGATCGGGAAACATGAAAAGATGGGTATGAATGTGGTTCCATTGAAAGATCTTACTCCTGACGAAGCTAAAGTTTTGACTCTCGAGCTGTTAAAAAACATGGATCCAAACGACGCTCAAAACGAAAAGTCGAGAGGGCAGATCGAAGTTGAATTATTGTACAAACCCTTCAAAGATGACGAAATTCCGAAAAATGTGGAAGATTCAGAGTCTGTACAAAAAGCTCCTGAAGGAACACCAGCTGCTGGTGGCTTGCTTGTCGTTAATATCCACGAAGCAGAAGATGTCGAAGGCAAGCACCACACCAATCCCTACGCGCGCTTACTCTTTCGAGGCGAAGAACGAAAAACAAAGACTATTAAGAAAAATCGGGATCCAAGATGGGAAGAGGAATTTCAATTTACGCTTGATGAGCCTCCGACGAATGACAAAATTTACTTTGAAGTAATGAGCGCATCGATTTTGTTGTTATTTTGGAATCAGGAAAATTTGGGTTATGTGAGTATAAATTTATCCGATGTCGTGACGAACAAAAGAATTAACGAGAAGTATCATCTGATCGATTCAAAGAACGGAAGGATTCAAATCGAGATGCAATGGAGAACTGCTGCTTAA 1650 41.64 MGILSTALGFCGFGVGTSIGIVVGYYMFIYFQPTDVKDPVVRPLVEHDSKTLQQLMPEMPLWVKNPDYDRVDWLNKFIENMWPYLDKAICKMVRNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYSTDEKELITELLMKWAGNPNIIIGVKAFGLKATVQVVDLQVFAAPRITLKPLVPTFPCFAKILVSLMEKYCLHLMKRFQAPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMKKPVGILNVKVLRAVKLKKKDLFGLSDPYVKLKLTEENLPAKKTTVKHSNLNPEWNEEFHFVVKDPESQAFELIVYDWDQIGKHEKMGMNVVPLKDLTPDEAKVLTLELLKNMDPNDAQNEKSRGQIEVELLYKPFKDDEIPKNVEDSESVQKAPEGTPAAGGLLVVNIHEAEDVEGKHHTNPYARLLFRGEERKTKTIKKNRDPRWEEEFQFTLDEPPTNDKIYFEVMSASILLLFWNQENLGYVSINLSDVVTNKRINEKYHLIDSKNGRIQIEMQWRTAA 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51317026 51321131 - Bda003803.1 Bda01g01538 1538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01538 549 ProSiteProfiles C2 domain profile. 251 373 IPR000008 -
Bda01g01538 549 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 260 IPR031468 GO:0008289
Bda01g01538 549 ProSiteProfiles C2 domain profile. 413 529 IPR000008 -
Bda01g01538 549 Pfam C2 domain 430 531 IPR000008 -
Bda01g01538 549 Pfam C2 domain 271 369 IPR000008 -
Bda01g01538 549 Gene3D C2 domain 259 401 IPR035892 -
Bda01g01538 549 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 259 IPR039010 -
Bda01g01538 549 Gene3D C2 domain 430 547 IPR035892 -
Bda01g01538 549 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 267 403 IPR035892 -
Bda01g01538 549 PRINTS C2 domain signature 288 300 IPR000008 -
Bda01g01538 549 PRINTS C2 domain signature 315 328 IPR000008 -
Bda01g01538 549 PRINTS C2 domain signature 337 345 IPR000008 -
Bda01g01538 549 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 547 - -
Bda01g01538 549 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 429 546 IPR035892 -
Bda01g01538 549 CDD C2 431 531 - -
Bda01g01538 549 SMART C2_3c 272 372 IPR000008 -
Bda01g01538 549 SMART C2_3c 430 528 IPR000008 -
Bda01g01538 549 CDD C2 273 366 - -
Bda01g01538 549 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 547 IPR045050 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01538 - - - nnu:104604246 917.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01538 Bda08g01211 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01538 Bda-Chr1:51317026 Bda14g00351 Bda-Chr14:2575985 0 dispersed
Bda01g01538 Bda-Chr1:51317026 Bda14g00614 Bda-Chr14:4613425 0 wgd
Bda01g01538 Bda-Chr1:51317026 Bda08g01211 Bda-Chr8:49655382 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01538 Bda_Chr01 FPKM 2.62269 2.991778 2.900509 3.819112 4.493452 3.872507 4.872014 1.382293 1.393008