Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01544 ATGGCTGCCACTGCCGATTCTTCGTCCAATCGTCACGCTGCCGGTGCGGCGGCGGTTCCCGGAGACAGTGGCAACAGCCCACAATTCTTGCGGAGTAATTTTCCGTCTCCGTGGGCCCAAGTCGTTCGAGGAGAGCAAGAATCAATTTCGGCCCTCCGTCACTCGCCGCCTTCGTCTTCATCGTCGCTGTCTTCGCTGGCGACGTCTGTTCAGGAACAAAATTCTTTTTCCGATTGCTTTCCTTCTCAAGCGGCACATTCCTCGCCGCCGCCGCCGCTACCGCAGGGAAATTTTGCGACAGGTGAGACCTCCGATGCGAGTAACGTCAATGCAGCTGCTCAAATCAAGAAGCCTGTTTGGAACAAGCCCTCCAACGGCGCTGTTGAAGTTAGTCCTGTAATGGGAGCGGTCTCTTGGCCGGCATTATCCGAGTCTACTAAGTTTTCATCTAAGTTTCAGAGTGAGTCTTCATTGAAGGCCGCTTCTGATGGATCAAACTCTAGTTCACAGGAACCTGCTAATCCGCCTCTTCCTCATAAACATGCAAGTACTAATGCAAAACCTAACTCTACATCAAATCACACAATGCCTGTCCGACAACGATACAATAAGCGTGGCAACAACAGTAACCATAGCAGCAGCATTGGAGGTGGGCCTCCTCGTGGTGGATTTGTCCGGCCTTCCCAAACTCCGCCACCACCATCTTTTCCTGCGTACCAAGTGCCTCCTAATACTTATGGCAATCTGGTGCCACCAATGGCAGACACATCTCTTCGAGATTCTTCTTTTCTGAACAATAATTGGGATACCAGGCCTGTTGGAGGATTCATATCACAGCAAAATCCAGTCAATGAACACCGTGGTGGTACGACACGGAGAGGAAACTTCAACCCCAACATGCGTGGAGATGGTATCTACCACCATAGTCGGGCTAGACCAGATGATGAGCGTGGAAATTATGGTAATGCCAGAGATGTTCATATGCAGCAACAGCAACAGCAACAGAGACCTCATCCAAGAAGTTTCATGGCCCATCCATCATCCTATACGGCTCCCGCTCCATTTTTATCTCATCAACCAGTGAGAGCCTTTGGAAATCCCATGGGTTATCAAGAATTTGTCTATTTCCAGCCAATGCCTTTCGAGCCATTACCTTTGGAGCATTACCGAGGTCCACAGTTCATACCGCATCTTCCAATAATTCAACCTTACGCAGACCCTCATTTGCCCACCTTATTGATCAACCAGATAGACTATTATTTCTGTGATGCTAATTTGGTAAAAGACCCTTTTTTGAGGTCCAATATGGATGATGAAGGGTGGGTTTCAATTGATGTAATAGCAAACTTTCCAAGAGTGAAGAAGTTGACCGGGGATTCTCGTTTAATACTAGATTCCATGAAATCTTCAACTGTTGTTGAAGTTCAGTACCATGCCATTTTTTGTACAACCAGCAATATGGCGTCAATTTATTCAGTCGATCTGACACTAGTTTTGTCTATGTTCCAGGATAATAAGATGAGAAGGCGTGATGACTGGGTCAAGTGGATCCCAAATCAGAATCAGATGGCTATGGATTCACAATCATCGGCTAAATCAAATCAAGACATGATGATGACATTTAAAAATTTTAAAATCGAGGAAGTAGGTAGCAGCCACACTAGCACAAATGGTGAAGGAGACTCAAAAGACGGAGATGCAGCTGGAGAAGTCAGTGAACTACCCAATGGAGAAGTCGCCCAGAATACCAATTCCTCAAAATGA 1764 46.71 MAATADSSSNRHAAGAAAVPGDSGNSPQFLRSNFPSPWAQVVRGEQESISALRHSPPSSSSSLSSLATSVQEQNSFSDCFPSQAAHSSPPPPLPQGNFATGETSDASNVNAAAQIKKPVWNKPSNGAVEVSPVMGAVSWPALSESTKFSSKFQSESSLKAASDGSNSSSQEPANPPLPHKHASTNAKPNSTSNHTMPVRQRYNKRGNNSNHSSSIGGGPPRGGFVRPSQTPPPPSFPAYQVPPNTYGNLVPPMADTSLRDSSFLNNNWDTRPVGGFISQQNPVNEHRGGTTRRGNFNPNMRGDGIYHHSRARPDDERGNYGNARDVHMQQQQQQQRPHPRSFMAHPSSYTAPAPFLSHQPVRAFGNPMGYQEFVYFQPMPFEPLPLEHYRGPQFIPHLPIIQPYADPHLPTLLINQIDYYFCDANLVKDPFLRSNMDDEGWVSIDVIANFPRVKKLTGDSRLILDSMKSSTVVEVQYHAIFCTTSNMASIYSVDLTLVLSMFQDNKMRRRDDWVKWIPNQNQMAMDSQSSAKSNQDMMMTFKNFKIEEVGSSHTSTNGEGDSKDGDAAGEVSELPNGEVAQNTNSSK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51339071 51342229 - Bda003809.1 Bda01g01544 1544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01544 587 ProSiteProfiles La-type HTH domain profile. 403 492 IPR006630 -
Bda01g01544 587 SUPERFAMILY Winged helix DNA-binding domain 403 477 IPR036390 -
Bda01g01544 587 CDD LAM 413 476 - -
Bda01g01544 587 Pfam La domain 414 468 IPR006630 -
Bda01g01544 587 MobiDBLite consensus disorder prediction 324 341 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 144 244 - -
Bda01g01544 587 PANTHER LUPUS LA PROTEIN-RELATED 503 559 IPR045180 -
Bda01g01544 587 PANTHER LUPUS LA PROTEIN-RELATED 50 477 IPR045180 -
Bda01g01544 587 PANTHER LA-RELATED PROTEIN 1B 503 559 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 51 84 - -
Bda01g01544 587 Gene3D - 402 490 IPR036388 -
Bda01g01544 587 MobiDBLite consensus disorder prediction 225 240 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 1 110 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 305 322 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 549 587 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 183 216 - -
Bda01g01544 587 PANTHER LA-RELATED PROTEIN 1B 50 477 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 144 174 - -
Bda01g01544 587 MobiDBLite consensus disorder prediction 273 344 - -
Bda01g01544 587 SMART la 407 480 IPR006630 -
Bda01g01544 587 MobiDBLite consensus disorder prediction 273 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01544 K18757 LARP1; la-related protein 1 - tcc:18591599 459.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01544 Bda03g00295 CCT
Bda01g01544 Bda08g01199 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01544 Bda-Chr1:51339071 Bda08g01182 Bda-Chr8:47493214 6.59E-158 dispersed
Bda01g01544 Bda-Chr1:51339071 Bda03g00295 Bda-Chr3:2614677 1.32E-08 wgd
Bda01g01544 Bda-Chr1:51339071 Bda04g00164 Bda-Chr4:4719281 5.07E-51 wgd
Bda01g01544 Bda-Chr1:51339071 Bda08g01197 Bda-Chr8:48607925 3.19E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01544 Bda_Chr01 FPKM 27.403835 29.105316 24.842159 25.328747 15.889883 16.478746 15.805905 41.009056 37.496521