Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01549 ATGTTTCTGAGCTTAGCGACGTCCGGATTATTTGAAGTTTTGCTTTGCGTCGTAGTTTCTTTGTTCGCCATTGTTATTGCTGATGATCCTTACCGATTCTACGACTGGAAAGTTACTTTCGGAGACATTTATCCCCTCGGTGTAAAACAACAGGGAATACTCATCAATGGGCAATTTCCAGGACCCGATGTTCATTCTGCGACCAATGAAAATCTCAGTATTAACGTCCACAACAGTTTGGACGAACCATTCCTCATCTCTTGGAATGGAATTCAGATGAGGAGGAATTCGTTTGAAGATGGAGTGAGTGGAACAACATGCCCAATACCCCCTGGCAAAAACTTCACCTACATTTTCCAAGTGAAGGATCAGATTGGGAGCTTCTTCTATTTCCCTTCTCTTGCATTTCACAAAGCAGCTGGTGGTTTTGGTGGAATCAGGATCTTTACCCGCCCCCGAATTCTCCTTCCATTCCCGGACCCTGCCGGTGATTTCACCGTCCTCATTGGAGATTGGTACACGGCTAATCACACGAGTTTGATAAAGAAATTGGATTGCGGAAAAAAGCTTCCATTTCCTGATGGCATTCTCATTAATGGCCGCTGCACCGGCGGCGCCTGGTTTATCGTGGAAAAAGGTATACATAAATCATATGAAGATCCTTACAATCTAATACAAAATAAAGTTAGCCTTGCTGGATTGCATGATAAAGGTAAAGCAGCTATTCTTGAGCTAGAAACAAAAAGCTACAACAAAGAGTCTGGTGAACTGTTATGCATGAACCGAACTACTGCCTTCCTGCGAGGTGCTGGTGGCTTCTCAAGTTCATCTCATCCCTATTCTTATTCAAACTATAAACCAGATAAACCCATTAGAATACCAAAAACACAACCTTCCGCAGCGTTGTTGTATAGGCTGTCTGGCGACTACAATCCTCTTCATTCAGATCCGCTGGTTGCCAAAAATGCAGGGTTCACGAAACCGATTCTTCATGGGTTGTGCACACTAGGATTTGCCGTGAGGGCAATCATCAAGTGCATTTGTAGAGGAGATCCAAGCATGGTGAAATCTATATCAGGCAGATTTCTTCTGCATGTTTACCCTGGAGAATCTTTGATCACAGAAATGTGGCTTGAAGGATCCAGGGTGCTGTATCAGACAAAGGTGAAAGAACGCAACCGAACTGTACTATCCGGCTACGTAGACATCAATCGTTTTGCTTCGTCACTTTAA 1233 43.71 MFLSLATSGLFEVLLCVVVSLFAIVIADDPYRFYDWKVTFGDIYPLGVKQQGILINGQFPGPDVHSATNENLSINVHNSLDEPFLISWNGIQMRRNSFEDGVSGTTCPIPPGKNFTYIFQVKDQIGSFFYFPSLAFHKAAGGFGGIRIFTRPRILLPFPDPAGDFTVLIGDWYTANHTSLIKKLDCGKKLPFPDGILINGRCTGGAWFIVEKGIHKSYEDPYNLIQNKVSLAGLHDKGKAAILELETKSYNKESGELLCMNRTTAFLRGAGGFSSSSHPYSYSNYKPDKPIRIPKTQPSAALLYRLSGDYNPLHSDPLVAKNAGFTKPILHGLCTLGFAVRAIIKCICRGDPSMVKSISGRFLLHVYPGESLITEMWLEGSRVLYQTKVKERNRTVLSGYVDINRFASSL 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51409240 51415316 - Bda003816.2 Bda01g01549 1549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01549 410 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 227 279 IPR029069 -
Bda01g01549 410 SUPERFAMILY Cupredoxins 25 178 IPR008972 -
Bda01g01549 410 PANTHER MULTI-COPPER OXIDASE 15 213 IPR045087 -
Bda01g01549 410 CDD CuRO_1_AAO_like_1 33 148 IPR034273 GO:0005507
Bda01g01549 410 CDD HDE_HSD 286 401 - -
Bda01g01549 410 Pfam MaoC like domain 293 395 IPR002539 -
Bda01g01549 410 Gene3D Hotdog Thioesterase 218 408 - -
Bda01g01549 410 Gene3D - 23 149 IPR008972 -
Bda01g01549 410 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 292 401 IPR029069 -
Bda01g01549 410 PANTHER OSJNBA0084K11.18 PROTEIN 15 213 - -
Bda01g01549 410 Pfam Multicopper oxidase 38 150 IPR011707 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01549 - - - jre:108984516 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01549 Bda-Chr1:51409240 Bda04g00301 Bda-Chr4:46309840 6.09E-82 dispersed
Bda01g01549 Bda-Chr1:51409240 Bda14g00637 Bda-Chr14:4771082 5.28E-94 wgd
Bda01g01549 Bda-Chr1:51409240 Bda08g01183 Bda-Chr8:47527473 2.66E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g139 . . . . . . . . Cmo05g00335 . . . . . Sed11g1117 . . Bhi04g00089 Tan02g2797 Cmetu03g2098 . Hepe10g0193 . Lcy13g1873 Cla08g01389 Cam08g1862 Cec08g1441 Cco08g1573 Clacu08g1556 . Cre08g1340 . . . Cone20ag0047 . . . Cme03g01547 . Blo18g00759 . Bda01g01549 Bpe02g01745 . Bma01g00713 . . . . . Cma05g00334 Car05g00278 . . . . . . . . . . . . . . . . . Lsi08g01279 . Chy03g01055 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011236 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01549 Bda_Chr01 FPKM 0.612999 0.590952 0.57304 0.274191 3.027607 1.67752 2.765832 0.455186 0.485968