Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01560 ATGGCTGGATCCGACGAGAACAACCCGGGAGATATGGGACCCGCAGATCAGCAAGGTGGACGTGCAGGAGGCGTCAAATTCGTGTTTGGGGCAGGCCAAAACCGTAGAGCGTTGAGCATTATTAACCGGAATATTGCCGGAGCTCCCCCTTACCCATGTGCAGTCCACAAAAGAGGCTTGACAGAAAAACATGCTGTCTGCAATAAGTTCCCAAGCGTTCTGGTGCATCGACCAATCACTAGGAAGTTTGCTGCCCAGATGGTCAATAAGCAGCAACAAACAGAACCAGAGGAGATTCAGAAACCTGTCAAGTTGGTCGAAAAGGAATCAGAAGATTGCTCCATCATAGACCTGGAAGACGACAATGAAACGGAGGAACTCCCAATTGCCAAGTTTTCCCAACACACAGAAGCAATGTTGGAGGAAGTTGATGCCATGGAGGAAGTGGAAATGGAAGATATCGCTGAAGAGTCAGTTGTGGACATAGACAGCCTTGATAAAAACAATCATCTTGCAGTTGTTGAGTACATTGATGATTTGTATGCCTACTACAGAAAAGTAGAGAGTTCTAGCTGCGTCCCACCAAACTACATGGCTCAGCAGGCAGAGATTAACCAGAGAATGAGAGGTATTCTAGTCGATTGGCTAATCGAGGTGCATTACAAGTTTGAGTTGATGGAGGAGACTCTATACCTCACAGTCAACCTGATTGATAGATTCTTAGCAGTTCAGTCAGTGGTCAGGAAGAAACTGCAGCTGGTCGGAGTAACAGCTATGCTTCTCGCATGCAAATATGAAGAAGTTTCGGTTCCTGTGGTGGAGGATCTCATCCTGATTTCTGATAAAGCTTACAGTAGAAAAGAAGTGCTTGAGATGGAAAAAATGATGGTAAATTCTTTGCAGTTCAATCTCTCAGTTCCCACGTCTTATGTATTCATGAGGAGATTTCTCAAAGCTGCTCAATCCGACAAAAAGCTTGAACTACTGTCGTTCTTCATGATCGAACTCTGTCTGATAGAGTACGAAATGCTAAAGTTTCAGCCGTCTTTGTTAGCTGCATCTGCAATTTTCACAGCCCAGTGTTGTCTTAGTGGGTCTAAGCAATGGAGCAGCACCAGTGTATTGCATAGTTGCTATTCAGAAGAGCAGCTTTTGGAATGCTCGCAGATGATGGTAGGTTTCCATCAGAAAGCTGGAACAGGGAAGCTGACAGGAGTTCACAGGAAGTATTCCACGTCCAAGTTTGGTTATGTCGCAAGAACAGAGCCTGCTAACTTTCTGTTGTGA 1287 45.14 MAGSDENNPGDMGPADQQGGRAGGVKFVFGAGQNRRALSIINRNIAGAPPYPCAVHKRGLTEKHAVCNKFPSVLVHRPITRKFAAQMVNKQQQTEPEEIQKPVKLVEKESEDCSIIDLEDDNETEELPIAKFSQHTEAMLEEVDAMEEVEMEDIAEESVVDIDSLDKNNHLAVVEYIDDLYAYYRKVESSSCVPPNYMAQQAEINQRMRGILVDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLLACKYEEVSVPVVEDLILISDKAYSRKEVLEMEKMMVNSLQFNLSVPTSYVFMRRFLKAAQSDKKLELLSFFMIELCLIEYEMLKFQPSLLAASAIFTAQCCLSGSKQWSSTSVLHSCYSEEQLLECSQMMVGFHQKAGTGKLTGVHRKYSTSKFGYVARTEPANFLL 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51495590 51497796 - Bda003829.1 Bda01g01560 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01560 428 Pfam Cyclin, C-terminal domain 307 422 IPR004367 -
Bda01g01560 428 CDD CYCLIN 305 392 IPR013763 -
Bda01g01560 428 PANTHER CYCLIN-B2-3-RELATED 24 425 - -
Bda01g01560 428 Gene3D - 193 305 - -
Bda01g01560 428 SUPERFAMILY Cyclin-like 168 304 IPR036915 -
Bda01g01560 428 Gene3D - 179 419 - -
Bda01g01560 428 SUPERFAMILY Cyclin-like 306 425 IPR036915 -
Bda01g01560 428 CDD CYCLIN 208 297 IPR013763 -
Bda01g01560 428 MobiDBLite consensus disorder prediction 1 24 - -
Bda01g01560 428 SMART Cyclin_C_2 307 424 IPR004367 -
Bda01g01560 428 Pfam Cyclin, N-terminal domain 179 305 IPR006671 -
Bda01g01560 428 ProSitePatterns Cyclins signature. 209 240 IPR006671 -
Bda01g01560 428 SMART cyclin_7 214 298 IPR013763 -
Bda01g01560 428 SMART cyclin_7 311 393 IPR013763 -
Bda01g01560 428 PIRSF Cyclin_A_B_D_E 29 428 IPR039361 -
Bda01g01560 428 PANTHER CYCLINS 24 425 IPR039361 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01560 Bda03g00194 CCT
Bda01g00581 Bda01g01560 CCT
Bda01g01560 Bda03g00194 ECH
Bda01g00581 Bda01g01560 ECH
Bda01g01560 Bda01g00581 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01560 Bda-Chr1:51495590 Bda11g00971 Bda-Chr11:9465763 1.44E-173 dispersed
Bda14g00493 Bda-Chr14:3583814 Bda01g01560 Bda-Chr1:51495590 2.46E-44 dispersed
Bda01g01560 Bda-Chr1:51495590 Bda11g00693 Bda-Chr11:6914682 3.79E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01560 K21777 - tcc:18591703 619.772