Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01561 ATGGACGGGGACAGAAATGAAGGTGGAGCAGAGATTTTGGATGAAGAGGGTGATTTTAGCACGTCCAATCCTCCCGAGGAATTGCCTGTTGCTCAAGGCTTGGTGGCAATAATTGAATGTGTGGCGCAGTATGGAGATTATAAAAGGACTCAGAGAAAGGAATGTTATAACCTTGTGCGGCGCATGAAGTTGTTATTGCCGCTTTTTGAAGAATTACGGGATTTGGAAACGACGATCCAGGAGAATGGCGTTGTTTGGTTGTGCAATCTGAAGAAGGCTTTGCTTGCGGCCAATAAATTGTTAAAAACCTGTAATGAGGGAAGCAAGATTTATTTGGCCCTCGAAAATGAAGCGATTATGATCAAATTTAAGGGCGTTTATGATAAAATGATCAAAGCTTTGGATGGTTTGCCACATGAAGAACTGGGGGTCTCAGATGAAGTGACAGAAGAGGTAGAGCTGATGCGCACGCAACTTAAACGAGCAAAAAGACGCACAGACACCCAGGATATAGAGCTTGCAATGGATATAATGGTAGTACTCTCTAAACAGGATGAAAGAAATGCAGATAGTGTCGTAATAGAAAGAATTGCGAAAAAGCTCGACTTGCAAAGCACTGAGAATATTAAAATAGAAACCATGGCTGTAAAAGCCCTTGTAAAAAAAAGAGGTGGACCAAATGCAGAGAGTACCCAGCAAATCATCGATTTGCTTCAAAAGTTCAGACTGGCAGCAGGGATGGAAAACACCAGCATTCTTGATGATCCTGTTATGCCTAAAACGCTTGAGAAATGCCCTTCTCTGGTGATTCCCCATGAATTCCTATGTCCAATCACCCTCGAAATAATGACAGATCCTGTTATCATTGCCAGCGGACAGACGTATGAGAGAGAGAGCATAGAGAAGTGGTTCGAAACCAACCACCGGACATGTCCGAAGACCAGGCAGACTCTTGCTCACCTAGCTTTGGCGCCGAATTATGCGCTGAAAAACCTTATACTGCAGTGGTGCGAGAAGCATAAATTCCAGCTTCCCAAGAAGGACACATGTGCAGGACTGGAGAGCTCCTACCCAGAACACAAAGAGGAAATCTCCTGTCTGGTTGAGAACCTTTCATCCAGTCAGTTAGACGTGCAGAGAAAAACTGTGATGAAAATACGGATGCTCTCGAAAGAGAATTCTGAAAATAGAGTTTTGATAGCTAATGGTGGAGGAATCCCACCTCTCGTGCATCTCCTTTCATATCCTGATTCCAAGATTCAAGAGCATGCGGTTACAGCCTTGTTGAATTTGTCAATTGATGAAGCCAACAAAACGTTGATTGCTAGAGAAGGGGCCATCCCATCCATTATTGAAGTTTTGCAGAAAGGCAGCATTGAAGCCAAAGAGAACTCTGCAGCAGCCTTGTTTAGCTTATCAATGGTGGACGAGAATAAGCTAACTGTTGGGCTGTCCAACGGTATACCACCCTTGGTTGATTTGTTGGAGAATGGTACAATTAGGGGTAAAAAAGATGCGGCCACTGCACTGTTCAACCTATCTCTAAACCAAGGAAACAAGGCAAGAGCAATTAGTGCTGGCATTGTCACGCCCTTGCTCCATCTACTCAAGGACAGAAACTTGGGCATGGTTGATGAAGCCCTCTCCATCTTCTTGCTTCTCTCGTCACACCCAGATGGGCGGCAGGAAATCGGGCAGCTATCATTTATTGAAACTCTGGTCGAGTTCATTCGAGAAGGAACTCCTAAGAACAAGGAATGTGCAACTTCGGTTCTGCTCGAGCTGGGTTCAAAGAATTCGTCCTGCATTTTGGCTGCACTTCAGCTTGGAGTCTACGAGCATTTGGTTGAGGTCTCGAACACCGGAACGAATCGAGCGAAGAGAAAATCGATTGCACTCTTGCAGCTCATGAGCAAAAGTGAGCAAATTCCTTGA 1935 44.7 MDGDRNEGGAEILDEEGDFSTSNPPEELPVAQGLVAIIECVAQYGDYKRTQRKECYNLVRRMKLLLPLFEELRDLETTIQENGVVWLCNLKKALLAANKLLKTCNEGSKIYLALENEAIMIKFKGVYDKMIKALDGLPHEELGVSDEVTEEVELMRTQLKRAKRRTDTQDIELAMDIMVVLSKQDERNADSVVIERIAKKLDLQSTENIKIETMAVKALVKKRGGPNAESTQQIIDLLQKFRLAAGMENTSILDDPVMPKTLEKCPSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIEKWFETNHRTCPKTRQTLAHLALAPNYALKNLILQWCEKHKFQLPKKDTCAGLESSYPEHKEEISCLVENLSSSQLDVQRKTVMKIRMLSKENSENRVLIANGGGIPPLVHLLSYPDSKIQEHAVTALLNLSIDEANKTLIAREGAIPSIIEVLQKGSIEAKENSAAALFSLSMVDENKLTVGLSNGIPPLVDLLENGTIRGKKDAATALFNLSLNQGNKARAISAGIVTPLLHLLKDRNLGMVDEALSIFLLLSSHPDGRQEIGQLSFIETLVEFIREGTPKNKECATSVLLELGSKNSSCILAALQLGVYEHLVEVSNTGTNRAKRKSIALLQLMSKSEQIP 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51500294 51502861 + Bda003830.1 Bda01g01561 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01561 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Bda01g01561 644 CDD RING-Ubox_PUB 274 316 IPR045210 -
Bda01g01561 644 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 24 641 - -
Bda01g01561 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Bda01g01561 644 SMART arm_5 516 556 IPR000225 GO:0005515
Bda01g01561 644 SMART arm_5 393 433 IPR000225 GO:0005515
Bda01g01561 644 SMART arm_5 475 515 IPR000225 GO:0005515
Bda01g01561 644 SMART arm_5 599 639 IPR000225 GO:0005515
Bda01g01561 644 SMART arm_5 434 474 IPR000225 GO:0005515
Bda01g01561 644 SMART arm_5 557 597 IPR000225 GO:0005515
Bda01g01561 644 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Bda01g01561 644 SUPERFAMILY ARM repeat 364 640 IPR016024 -
Bda01g01561 644 MobiDBLite consensus disorder prediction 1 24 - -
Bda01g01561 644 Gene3D - 27 139 IPR036537 GO:0007166
Bda01g01561 644 Gene3D - 345 643 IPR011989 -
Bda01g01561 644 PANTHER U BOX DOMAIN-CONTAINING 24 641 - -
Bda01g01561 644 Pfam Armadillo/beta-catenin-like repeat 476 514 IPR000225 GO:0005515
Bda01g01561 644 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Bda01g01561 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Bda01g01561 644 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Bda01g01561 644 Coils Coil 145 165 - -
Bda01g01561 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Bda01g01561 644 Pfam U-box domain 270 341 IPR003613 GO:0004842|GO:0016567
Bda01g01561 644 SUPERFAMILY RING/U-box 270 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01561 Bda-Chr1:51500294 Bda07g00590 Bda-Chr7:7230889 1.92E-176 dispersed
Bda14g01265 Bda-Chr14:13332278 Bda01g01561 Bda-Chr1:51500294 5.39E-22 dispersed
Bda06g00438 Bda-Chr6:6458074 Bda01g01561 Bda-Chr1:51500294 0 transposed
Bda08g00067 Bda-Chr8:571270 Bda01g01561 Bda-Chr1:51500294 3.65E-08 transposed
Bda01g00461 Bda-Chr1:31712987 Bda01g01561 Bda-Chr1:51500294 2.30E-23 wgd
Bda01g01561 Bda-Chr1:51500294 Bda04g00184 Bda-Chr4:5644054 1.80E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01561 - - jre:109016026 932.939