Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01564 ATGGCTGAAAGTTGGGATGGAAGCGATGACCCCAGTAGCCAATCGGACGAGAGCATTTATGAAAGATTTCACATCGAACCTATTTATGATGCATTTGTCTGCCCTTTGACGAAGCAAGTGATGCGTGATCCTGTTACTCTAGAAAATGGGCAAACTTTTGAACGAGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGATAGTGGAAAGAAGCTAGTCTGTCCATTGACTCTGAAAGAGCTGAGAAGCACTGATCTGAACCCTAGCATTGCTCTACGAAACACCATTGAAGAATGGATTGCCAGGAATGAATCTGCTAAGCTTGATGGGGCTCGTAGATCATTGAATCTGGCAAGCTCAGAAAGTGATATATTGCTATCGCTCAAATATGTTAAATACATCTGCCAGAAGAGCCGATCCAATAAGCACGTCACACGTAATTCCGGGCTAATACCTATGATTATTGATTTGTTGAAGAGCAGCAGCAGAACTGTTCGCTGTAAAGCCTTGGAGACACTTTGTTTTGTGGTGCAGGAAGATGATGATAACAAGGAAATATTCGTTGAGGGTGACACTGTACGCACTATAGTGAAGTTCTTGTGGCATGAACTTTCTCAAGAGAGGGAGGAAGCTGTCTCTTTGTTATATGAGCTCTCTAAGTCTGGAATCTTGTGCGAGAAGATAGGATCAATCAATGGTGCAATTTTGCTTTTGGTTCGAATGGCAAGCAGCAAATCGCAGAATCTCTTAACTGTTGAGAAGGCTGAAAAAACGCTGGAGAATTTGGCGAAGTTCGAGAATTATGTGAGACAGATGGCTGAGTATGGTAGACTACAACCTCTTCTAACTTGTATCCTTGAAGCCCCGCCAGAATTGAAACTCTCAATGGCGACCTTCTTGGGCGAACTGGTTCTAGATAATGATGTCAAGGTCCTTGTGGCTAAAACTGTTGGATCATCTTTGATCAATTTGATGAGAAGTGGTAACAAGCACTCAAGAGAAGCTGCTTTGAAAGCTCTAAACCAGATATCCTCTTTTGAGAATAGTGCGAAAGTGTTGATAGAGGAAGGAATACTTCCACCCCTTGTGAGGGACCTTTTCACAGTTGGTGCCAACCAACTTCCTATGAGACTAAAAGAGGTCTCTGCAACAATACTTGCCAATGTTGTCAACTCCGGCTATGAGTTAGATTCCATTCCAGTCGGACCTGATCAGCAGACTACTCTTGTCTCGGAAGACATAGTCCATAATCTGCTACATCTCATTAGCAACACTGGCCCAGCTATTGAATGCAAGCTTCTCCAGGTTCTTGTCGGACTTACTAATTCTCCATCGTCTGTTCTGAATGTTGTTTCTTCAATAAAAAGTTCAGGTGCGACCATCAGTTTAGTTCAGTTTATTGAGGCTCCACAGCCTGATTTGCGCTTGGCTTCCATAAAACTTCTCCACAACCTTTCCCTGCACATGGCTCACGACATAGCAGATGCCTTGCATAGCACAGCTAGCCAACTTGTGAGTCTGTTTAGAATCATGTCAGAAAATACTGGAATAATGGAAGAGCAAGCAGCTGCTGTTGGTCTCTTAGCTGAACTTCCAGAGAGGGATTTGGGGCTCAGCCGACAGATGCTTAATGAAGGTGCATTTACGATGGTTCACTCTAGAATAATGATGATTCAGCAAGGGGAGACTCGGGGCAGCCGCTTTGTTACACCATTTCTTGAAGGCTTAGTACGGATTCTTGCAAGGATTACATTTATCTTGGCCGATGAGCCCGATGCTATTGCATTTTGCCATAATCACAATATCGCTGCTTTGTTCATTGAATTGCTTCAGTCTAATGGGCTTGACAACGTGCAGATGGTTTCTGCCGTAGCGTTAGAGAACTTGTCGGCAGAATCCAAAAATTTGACGCAAATCCAAGAGTTGCCCACGCCCGGTTTTTGTGCCTCGGTTTTTCCATGTCTTGCCAAACCACCTGCAATGGCAGGATTGTGTAGGCTCCATAAGGGTAAATGTTCTTTGAGAGAAAGCTTTTGCCTTTTGGAAGGACATGCAACCGACAAATTAGTCGCTCTTTTGGATCATAGAAACGAGAGGGTTGTCGAGGCAGCTCTTGCGGCAATTTCTACTTTGTTGGATGATGGAGTAGAAATTGAACAGGGGGTATTTGTGTTGTGGGATGTACAAGGAGTGAAGCCTATACTTGATGTTTTAGTCGAAAAGCGTACAGAAAATCTACGGAGGAGGAGTGTTTGGGTGGTCGAAAGACTCTTGAGGACTGAGGAAATCGCGAAAGAAGTTTCCGGAAATCCAAACTTGAATACAGCTCTTGTGGATGCATACCAGCACGGCGACTATCGAACCAGGCAAATCGCTGAGCGGGCCCTGAAACACGTGGATAAGCTACCAAACTTCTCCGGAATCTTTCCAAACATGGGATGA 2442 44.19 MAESWDGSDDPSSQSDESIYERFHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKDSGKKLVCPLTLKELRSTDLNPSIALRNTIEEWIARNESAKLDGARRSLNLASSESDILLSLKYVKYICQKSRSNKHVTRNSGLIPMIIDLLKSSSRTVRCKALETLCFVVQEDDDNKEIFVEGDTVRTIVKFLWHELSQEREEAVSLLYELSKSGILCEKIGSINGAILLLVRMASSKSQNLLTVEKAEKTLENLAKFENYVRQMAEYGRLQPLLTCILEAPPELKLSMATFLGELVLDNDVKVLVAKTVGSSLINLMRSGNKHSREAALKALNQISSFENSAKVLIEEGILPPLVRDLFTVGANQLPMRLKEVSATILANVVNSGYELDSIPVGPDQQTTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTNSPSSVLNVVSSIKSSGATISLVQFIEAPQPDLRLASIKLLHNLSLHMAHDIADALHSTASQLVSLFRIMSENTGIMEEQAAAVGLLAELPERDLGLSRQMLNEGAFTMVHSRIMMIQQGETRGSRFVTPFLEGLVRILARITFILADEPDAIAFCHNHNIAALFIELLQSNGLDNVQMVSAVALENLSAESKNLTQIQELPTPGFCASVFPCLAKPPAMAGLCRLHKGKCSLRESFCLLEGHATDKLVALLDHRNERVVEAALAAISTLLDDGVEIEQGVFVLWDVQGVKPILDVLVEKRTENLRRRSVWVVERLLRTEEIAKEVSGNPNLNTALVDAYQHGDYRTRQIAERALKHVDKLPNFSGIFPNMG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51521042 51524782 + Bda003833.1 Bda01g01564 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01564 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 811 - -
Bda01g01564 813 Gene3D - 319 486 IPR011989 -
Bda01g01564 813 SUPERFAMILY RING/U-box 23 106 - -
Bda01g01564 813 SMART Ubox_2 31 99 IPR003613 GO:0004842|GO:0016567
Bda01g01564 813 ProSiteProfiles U-box domain profile. 27 106 IPR003613 GO:0004842|GO:0016567
Bda01g01564 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 113 IPR013083 -
Bda01g01564 813 SMART arm_5 180 220 IPR000225 GO:0005515
Bda01g01564 813 SMART arm_5 306 345 IPR000225 GO:0005515
Bda01g01564 813 SMART arm_5 590 631 IPR000225 GO:0005515
Bda01g01564 813 SMART arm_5 346 391 IPR000225 GO:0005515
Bda01g01564 813 SMART arm_5 138 178 IPR000225 GO:0005515
Bda01g01564 813 SMART arm_5 672 713 IPR000225 GO:0005515
Bda01g01564 813 Gene3D - 118 318 IPR011989 -
Bda01g01564 813 Gene3D - 573 804 IPR011989 -
Bda01g01564 813 SUPERFAMILY ARM repeat 457 801 IPR016024 -
Bda01g01564 813 CDD RING-Ubox_PUB 32 77 IPR045210 -
Bda01g01564 813 SUPERFAMILY ARM repeat 118 444 IPR016024 -
Bda01g01564 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 811 - -
Bda01g01564 813 Pfam U-box domain 30 104 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01564 Bda11g00977 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01564 Bda-Chr1:51521042 Bda11g00977 Bda-Chr11:9508778 0 dispersed
Bda01g01564 Bda-Chr1:51521042 Bda02g00859 Bda-Chr2:49047415 1.15E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01564 - - qsu:112023650 1239.94