Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01566 ATGCATAGCAAACGCTATGGAAAAGTGAAACTGCCATTGAGTATTGAAGATTACATTCGCAACACTCCTTATGTATCGGATGATGGAGCTGTCACGTTGGGTTCAAAGAAGACCAGTTTTTTCCTTCTTGACGCCAAATCCGGAAGATTAATCAATTCTCATACTCTGACCGATTTTCCTTCCACGTCAGGGTTAAAGAATGTGGACGAAGATCCTGTTTTGTTGAATGAAGATGCAGAAGAATTTCTAGAGTCTAGCACTGATGACTTAGAAGCAACTGAGTCGATGATTTACATCTTTAGAACAGATTATATGGTTCAGCATTATTCCCCAGACTCTGGCAAAGTATTATGGAATGTGACCTTCTCTGAATTTGATGCTTCTTTTCAATTGCGGAACCTGAATAAACCTTTTCTTACTTTTGGAAATGATCCTCCAGCCGAGTACCGTGGTGATATTGGGTTTCAAATTCCTCAGCAGACAAGGCCCATGATTTTCCGGATTCGCAATAATGGCCTGATGGAATCATTTTCAATTCTAGATACACTTGCAAATGCGTATAAGGAAGGCTGGCCACTCTCTCTACCATCTAATTATCACCAGCAACCCCCTGTCTCTATCGATCAGTTTCCATTATCTTTACAATACAAAGAAGGCAAGAAAATGCTTGCATTGCCCTCTCCTGAAACAGAAAATTTTGGGGTATTGCCAATTCACGATGGAGAAACTGGTAAATTCAAAAACACTAGCATGGTTGCCGATATTGCAGCTAGGTATAGTATGCAGTCTTTTGTTCCATTTCTTCTTACAATTCTAGCCATTGGGGCCTTAATCTTTTGTCAGTATTTTGGACGACTACTGTCTAGGTGGACTGAGCAGACATCAGACCTTAAAACACAAACTGGGATCTCTAAAAAGAAGAAAACTCGGAGGTCTGGAAATAATAAAAATGTTGCTAATAGTGACCAATCGCCAGAAACTATCAGCTCACGCATAAATAAAATTGAATATGATAAGGCAAGTCTACAAAAAGATGGAAGTGAAAAGAGATCCCCAATTTCCTTCAGCAGCCTCAATGACGGTCTTATGGAAGGGCGAAGAATTGGTAAACTAATTGTTTCGAGCAAAGAAATTGCTTTGGGAAGCAATGGTACGGTTGTACTTGAAGGAATTTATGATGGTCGTCCAGTAGCTGTGAAGCGTCTTGTGCAATCTCATCATGATGTGGCTCTGAAGGAGATTCAAAATCTTATTGCTTCTGATCAGCATCCAAATATAGTTCGATGGTATGGAGTAGAATATGATCAAGACTTTGTATATCTCTCCCTTGAGCGCTGTACTTGTAGTTTGTTCGACCTGATTTCCTTATGTTCTGAAACTTTTCAAAGTCAAACTGTCACCAAGGTCCAGGATTTAGATTCTAATGAATGCTCGCCAATTCAATCAGTGTTAGAGAATTCTAAGTTTACGGACTTGTGGAAGGCAAATGGTTATCCTTCACCTCAGTTGTTGAGGTTGATGAGGGATATTGTCTCTGGGCTTTCCCATTTGCATGAGCTCGGAATTATCCATAGAGACTTGAAGCCTCAAAATGTTTTGATAATCAAGGATAAATCTTTGTGTGGAAAGCTCTCAGATATGGGTATCAGCAAACGTCTTCGTGGGGACAGTTCATCTTTGACTCAGAATGCTACTGGTTATGGCAGTTCCGGTTGGCAAGCACCCGAACAGCTTCTCCAAAAACGACAGAGTCGTGGAGTTGATTTATTTAGTTTAGGCTGTGTTCTCTTTTTTTGCATTACTGGGGGTAAGCACCCATTTGGCGACGGCATTGAACGAGATGTAAATATCATTAATAACCGGATGGACCTTTTCCTGGTGGAGAGCTTACCAGAAGCTGAGGATCTTTTGTCTCGTCTTTTAGATTCTGATCCAGAGATGAGGCCGAGTGCTAAGGAAGTTTTGCATCATCCTTTCTTTTGGAGTTCAGAGCTGAGACTTGCGTTTCTCCGTGACGTTAGCGATCGGGTTGAACTGGAAGACAGGGAGGAATCTGAACTCTTAAAAGCACTAGAAAACGTTGGAGTCGATGCTTTAGATGGAAAGTGGGACGAAAAGATGGAAAATGCTTTTATCAATAACATAGGTAAGTACAGACGATACCGATACGACAGTGTCCGCGACTTACTACGCGTTATACGTAATAAGTTAAATCACTACCGAGAACTGCCTCAAGAAATCCAGGAGTTGTTAGGGCCAGTTCCCGAAGGATTCGAAAGTTATTTTACAAGCCGGTTTCCGAGGCTCCTTCACAAGGTCTATCAAGTGATACTCAAATACTGCAGGGAGGAGGAATTTATGATTAAATACAGTAGCTATATAATGTAA 2388 40.95 MHSKRYGKVKLPLSIEDYIRNTPYVSDDGAVTLGSKKTSFFLLDAKSGRLINSHTLTDFPSTSGLKNVDEDPVLLNEDAEEFLESSTDDLEATESMIYIFRTDYMVQHYSPDSGKVLWNVTFSEFDASFQLRNLNKPFLTFGNDPPAEYRGDIGFQIPQQTRPMIFRIRNNGLMESFSILDTLANAYKEGWPLSLPSNYHQQPPVSIDQFPLSLQYKEGKKMLALPSPETENFGVLPIHDGETGKFKNTSMVADIAARYSMQSFVPFLLTILAIGALIFCQYFGRLLSRWTEQTSDLKTQTGISKKKKTRRSGNNKNVANSDQSPETISSRINKIEYDKASLQKDGSEKRSPISFSSLNDGLMEGRRIGKLIVSSKEIALGSNGTVVLEGIYDGRPVAVKRLVQSHHDVALKEIQNLIASDQHPNIVRWYGVEYDQDFVYLSLERCTCSLFDLISLCSETFQSQTVTKVQDLDSNECSPIQSVLENSKFTDLWKANGYPSPQLLRLMRDIVSGLSHLHELGIIHRDLKPQNVLIIKDKSLCGKLSDMGISKRLRGDSSSLTQNATGYGSSGWQAPEQLLQKRQSRGVDLFSLGCVLFFCITGGKHPFGDGIERDVNIINNRMDLFLVESLPEAEDLLSRLLDSDPEMRPSAKEVLHHPFFWSSELRLAFLRDVSDRVELEDREESELLKALENVGVDALDGKWDEKMENAFINNIGKYRRYRYDSVRDLLRVIRNKLNHYRELPQEIQELLGPVPEGFESYFTSRFPRLLHKVYQVILKYCREEEFMIKYSSYIM 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51528641 51532276 - Bda003835.1 Bda01g01566 1566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01566 795 MobiDBLite consensus disorder prediction 298 327 - -
Bda01g01566 795 ProSiteProfiles Protein kinase domain profile. 372 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01566 795 PANTHER SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE1B 1 792 - -
Bda01g01566 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Bda01g01566 795 SUPERFAMILY Protein kinase-like (PK-like) 375 671 IPR011009 -
Bda01g01566 795 Gene3D Phosphorylase Kinase; domain 1 361 444 - -
Bda01g01566 795 Gene3D Transferase(Phosphotransferase) domain 1 479 662 - -
Bda01g01566 795 ProSiteProfiles KEN domain profile. 663 793 IPR010513 GO:0004540|GO:0006397
Bda01g01566 795 Pfam Ribonuclease 2-5A 666 790 IPR010513 GO:0004540|GO:0006397
Bda01g01566 795 CDD RNase_Ire1 664 790 - -
Bda01g01566 795 Gene3D KEN domain 664 794 IPR038357 -
Bda01g01566 795 PANTHER IRE1-RELATED 1 792 IPR045133 GO:0004521|GO:0004674|GO:0030968
Bda01g01566 795 SMART PGNneu 724 778 - -
Bda01g01566 795 Pfam Protein kinase domain 376 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01566 795 SMART serkin_6 372 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01566 K08852 ERN1; serine/threonine-protein kinase/endoribonuclease IRE1 [EC:2.7.11.1 3.1.26.-] - jre:109011489 924.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01566 Bda-Chr1:51528641 Bda02g00166 Bda-Chr2:28647709 0 dispersed
Bda01g01566 Bda-Chr1:51528641 Bda02g00228 Bda-Chr2:38377088 4.72E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g69 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00740 . Bda01g01566 Bpe02g01760 . Bma01g00697 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002039 1 4 2 2 2 2 3 2 2 3 1 2 2 2 2 2 2 3 2 4 2 1 2 3 1 1 1 2 1 3 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69455 PF00069 Pkinase 7.80E-41 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01566 Bda_Chr01 FPKM 8.599244 8.273232 13.313 12.246136 16.681858 19.41367 17.729965 19.609339 20.598679