Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01567 ATGGCTAGACGACATGGATGGGAACTCCCTTTTCACACCTTTCAGGTTGTGGCGATAACAGTTTTTTTCTTGCTATCTATTGCATTTTATGCCTTCTTTTCTCCCTTTCTTGGCAAGGAGATTTATCAGTACGTGGCCACCGGTGTTTATTCTGCTCTGGTACTAGCTGTATTTGTTCTCTATGTACGGTGCACTGCAATTGATCCAGCAGATCCTGGAATTCTTCTAGAATCTGACAAGACATCTGCCTGCAAATCGCATAACGGGATAGATGGGGCAGTTAATCACAATAACATTACCTATTGTTTTAATCTCCTGGTTTACTTTTCAATACCAGGCAATGCACCTTCTATAGAAGAAGCCAGAAAAATAGGCTTAAGAAATGAAGAAAAATCAGATAGTAAAAAATCAAGTTGGTTTTCTACAATTTGTTGCTTCTTTTGTGGTTTTCTTGTGAGAGAAGACTGCCGAAAAGACGATGAGCTACAACAACCTTCTGGAGAGGAGGATGCTCTATTCTGCACATTATGCAATGCTGAGGTCCGTAAATTCAGCAAACACTGTAGAAGTTGTGACAAATGTGTAGATGGATTTGATCATCATTGTCGGTGGTTAAATAATTGTGTGGGGAGAAAAAACTACATAACATTCGTATGCTTGATGGCAGCTAGCCTTGTGTGGCTTGTTGTTGAATTTGGAGTCGGAATTGCTGTCCTTGTTAGATGCTTTGTTGACAGAAAGGGGACAGAAGATCTTATTTCTGCAAAGCTTGGAGTTGGATTCACCCGGCCTCCTTTTGCTACAGTGGTGGCCCTCTGCACAGCTGTGTCTTTCTTGGCTACCATTCCTTTAGGAGAGCTTTTCTTTTTTCACATGATTTTAATCCGAAAGGGTATCACAACATATGAGTATGTAGTTGCTATGAGAACACAAAGTGAACCTCCTGGACCATCTGTTGATGGGGGTGAACAGCAGAGCCTGCCTTCTTCGCCAACCAATTCTGGTGTGACTGCCATAAGTGGGAGAAGTTCTGTTGGATTGAGTCTTCCATATAAAGGTGCTTGGTGCACGCCACCTAGAATTTTTATGGACCATCAGCAGGATGAAATTATACCACATTTGGAGCCTGGACGTCTGCCATCTACAGTGGATCCAGATGCAGTGCAGCCACCCGACAAGGGCCACAAAATACCCCAACGCCCGGTCCGAATCAGTGCATGGAAACTTGCAAAATTGGACTCTAACGAGGCAATTAAAGCAGCTGCCAAAGCAAGAGCTTCGTCTTCTGTTCTTCGTCCACTTGGCTCTCGACACCATCCTTACGATACTGATCATCTATCCAGCAGTAATGTGAGTGGAAGAAGCAGTCCGGTCAGTACTGATCAAGGATTTCGTAATAAAAATGCCCGAGCTGACACATGGAGGCTGTCTCCTTCCAAGAGCTCGTATCCTCCCAGCCGTACCAGCAAAGAAGATCTCGAAGCCTGTCATCAGAGTGTCAGTAACATGAGCAGTCCTCAAGTCTCCAACACAGCCCTTTCACCATTTGAGCCACAGGCAACCGACAGAGATCACATCAACCCCATTTATCAATCATCTGCTAATCAATCTCCCATGTCTGCAAATCAAACTGAAAGACATGAAAATCCGGTCAACGAAAATGCAGCAAAACTTCCTCTGAAGAAGAACAGCTCAGGCGCAGGGGAAGCCACAAGATCTTCAGTCTTTTGGGATCAAGAAGCTGGACGTTTTGTCTCCTCGTCCTCTAGAGTAGCTGGATCTACTTCTCACATTCCTGCAGCAGAACTCACCTACACAGGTCAATCTATATTTTTTGGTGGTCCTATAGTTTCTGAACAGATGAACAGAGCTTCGAGAAACAGCAATCCTCTGACCTCCAGGTCAAGATGA 1911 44.32 MARRHGWELPFHTFQVVAITVFFLLSIAFYAFFSPFLGKEIYQYVATGVYSALVLAVFVLYVRCTAIDPADPGILLESDKTSACKSHNGIDGAVNHNNITYCFNLLVYFSIPGNAPSIEEARKIGLRNEEKSDSKKSSWFSTICCFFCGFLVREDCRKDDELQQPSGEEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLVVEFGVGIAVLVRCFVDRKGTEDLISAKLGVGFTRPPFATVVALCTAVSFLATIPLGELFFFHMILIRKGITTYEYVVAMRTQSEPPGPSVDGGEQQSLPSSPTNSGVTAISGRSSVGLSLPYKGAWCTPPRIFMDHQQDEIIPHLEPGRLPSTVDPDAVQPPDKGHKIPQRPVRISAWKLAKLDSNEAIKAAAKARASSSVLRPLGSRHHPYDTDHLSSSNVSGRSSPVSTDQGFRNKNARADTWRLSPSKSSYPPSRTSKEDLEACHQSVSNMSSPQVSNTALSPFEPQATDRDHINPIYQSSANQSPMSANQTERHENPVNENAAKLPLKKNSSGAGEATRSSVFWDQEAGRFVSSSSRVAGSTSHIPAAELTYTGQSIFFGGPIVSEQMNRASRNSNPLTSRSR 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51536634 51541465 + Bda003836.1 Bda01g01567 1567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01567 636 MobiDBLite consensus disorder prediction 375 398 - -
Bda01g01567 636 MobiDBLite consensus disorder prediction 525 549 - -
Bda01g01567 636 MobiDBLite consensus disorder prediction 495 517 - -
Bda01g01567 636 Pfam DHHC palmitoyltransferase 170 306 IPR001594 GO:0016409
Bda01g01567 636 PANTHER PROTEIN S-ACYLTRANSFERASE 21 9 512 - -
Bda01g01567 636 MobiDBLite consensus disorder prediction 317 337 - -
Bda01g01567 636 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 512 - -
Bda01g01567 636 MobiDBLite consensus disorder prediction 426 574 - -
Bda01g01567 636 ProSiteProfiles DHHC domain profile. 172 222 - -
Bda01g01567 636 MobiDBLite consensus disorder prediction 313 337 - -
Bda01g01567 636 MobiDBLite consensus disorder prediction 445 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01567 K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11 [EC:2.3.1.225] - vvi:100254706 918.302
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01567 Bda-Chr1:51536634 Bda07g00211 Bda-Chr7:2477475 7.92E-149 dispersed
Bda01g01567 Bda-Chr1:51536634 Bda11g01199 Bda-Chr11:12314672 3.63E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g65 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00739 . Bda01g01567 Bpe02g01761 . Bma01g00696 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016654 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01567 Bda_Chr01 FPKM 2.95435 2.861992 11.262491 11.361318 15.218258 15.137218 15.403314 8.125296 6.895272