Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01574 ATGGGGGATTCGCCGGTGACGGAGCGTTTGAATGGTACAAATGCCAATTACCCCCGTCCTTCTCCTTCCTTCAAGCTTGAGATTCCTCCCGTTGATTCTTCACAGCAAACACCTCCCACAACTGTTGCTGCTCCGGCTCCTCCTCCTCTGACATTTGACCCATCTCCCTCCTCCGACGCGGACCTCATTCACATCCCCAGCTACTCAAGATGGTTTTCTTGGAACAGCATCCATGACTGCGAACTTCGCTTCCTTCCCGAGTTTTTCGATTCTCGCTGTTCTTCCAAGAACCCTAAGGTCTACAAGTACCTGAGGAATTCCATTGTCCAACGTTTCAGAGATAACCCGTCGTCCAAAATCACTTTCACCGATGTGCGAAAGACACTTGTCGGAGACGTGGGATCAATTCGAAGGGTTTTTGATTTTCTGGAGGCTTGGGGTTTGATAAATTACTCTCCTTCGATTCTTAACAAGCCCCTCAAGTGGGAGGACAAAGAAACTAAGTCTACTTCCTCCGTTTCACACGGAGAGGCTGGGGCTGCCCCCCCTGATTCTTCTTCTGCTCCTAGCAGAGAAGTGTCAAAAAGAGTTTGCAGTGGCTGCAAATCTAATTGCAGCATTGCCTGTTTTGCTTGTGACAAGTATGACCTGACTCTTTGTGCTCGGTGCTATGTCCGGGGAAACTATCGGGTCGGAGTCACTTCTTCAGATTTCCGGCGGGTTGAGATTAGTGAAGACATGAGAACAGATTGGACGGATAAAGAGACTTTGCACCTTCTTGAAGCCGTTATGCATTTTAGAGATGATTGGAAGAAAATTGCCCAACATGTTGGTGGTAGAAGTGAAAAGGAATGTGTAACTCATTTTGTCAAGCTTCCTTTCGGGGAGCAATTCATTAGTTATCCAGAATCAGTGGATAATGATAATAAACATATCTATTTGAAAGATCATGGAGATGCTAATTTTGGATCAGTTGATACAAGTACAATCTCTCCGAGTAAAAGAATTCGACTAACACCTCTTGCAGATGCAAGCAACCCCATTATGGCTCAGGCTGCATTTTTGTCTGCACTGGCTGGTGTTGAGGTTGCAGAAGCTTCTGCTCGGGCAGCTGTGGCGAACTTGTCGGAAATTGCAGGTAGACACTGTATTTTCTTGGGTTTGTTGCTTTGTGATTCTCCATGTGAATCTCTGCACACAGATGTCGACGGAGGCACTGGATCTCATGTCATTATGGGAGATTATGGAGATGTAAAGTCGGAGGTGGATGTGGAAAGAGCAATCTCCGAGATTATCGACGTCCAGATGAAAGAAATGCAAGATAGGCTGGACAGCTTTGAGGAATTAGATTTGCAGTTGGAAAAGGAAAGGCAGCAATTTGAACAAGTGAAAAACATTCTCTTTGCCGATCATCTCAACCTCATATTCAATAAAAGCTCAGATTCCAAAACCGCTGAAGACAACAACCTAAGAATAGATTTGTAA 1485 45.32 MGDSPVTERLNGTNANYPRPSPSFKLEIPPVDSSQQTPPTTVAAPAPPPLTFDPSPSSDADLIHIPSYSRWFSWNSIHDCELRFLPEFFDSRCSSKNPKVYKYLRNSIVQRFRDNPSSKITFTDVRKTLVGDVGSIRRVFDFLEAWGLINYSPSILNKPLKWEDKETKSTSSVSHGEAGAAPPDSSSAPSREVSKRVCSGCKSNCSIACFACDKYDLTLCARCYVRGNYRVGVTSSDFRRVEISEDMRTDWTDKETLHLLEAVMHFRDDWKKIAQHVGGRSEKECVTHFVKLPFGEQFISYPESVDNDNKHIYLKDHGDANFGSVDTSTISPSKRIRLTPLADASNPIMAQAAFLSALAGVEVAEASARAAVANLSEIAGRHCIFLGLLLCDSPCESLHTDVDGGTGSHVIMGDYGDVKSEVDVERAISEIIDVQMKEMQDRLDSFEELDLQLEKERQQFEQVKNILFADHLNLIFNKSSDSKTAEDNNLRIDL 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51577440 51580044 - Bda003842.1 Bda01g01574 1574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01574 494 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 285 IPR017930 -
Bda01g01574 494 Gene3D - 69 154 IPR036388 -
Bda01g01574 494 SUPERFAMILY Homeodomain-like 248 297 IPR009057 -
Bda01g01574 494 ProSiteProfiles SWIRM domain profile. 63 160 IPR007526 GO:0005515
Bda01g01574 494 CDD SANT 251 292 IPR001005 -
Bda01g01574 494 MobiDBLite consensus disorder prediction 1 55 - -
Bda01g01574 494 PANTHER SWI/SNF COMPLEX-RELATED 20 486 - -
Bda01g01574 494 SUPERFAMILY Homeodomain-like 61 163 IPR009057 -
Bda01g01574 494 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 20 486 - -
Bda01g01574 494 MobiDBLite consensus disorder prediction 167 191 - -
Bda01g01574 494 ProSiteProfiles SANT domain profile. 246 297 IPR017884 -
Bda01g01574 494 SMART sant 247 295 IPR001005 -
Bda01g01574 494 Pfam SWIRM-associated region 1 421 475 IPR032451 -
Bda01g01574 494 Coils Coil 436 466 - -
Bda01g01574 494 Gene3D - 247 296 - -
Bda01g01574 494 ProSiteProfiles Myb-like domain profile. 248 293 IPR001005 -
Bda01g01574 494 Pfam Myb-like DNA-binding domain 249 292 IPR001005 -
Bda01g01574 494 Pfam SWIRM domain 66 151 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01574 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - qsu:112010646 559.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01574 Bda-Chr1:51577440 Bda15g00645 Bda-Chr15:9878192 7.79E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01574 Bda_Chr01 FPKM 32.084465 35.183289 32.086891 33.145973 32.786182 27.397951 29.672382 43.87035 45.409897