Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01577 ATGCAGATGGGTGAGGCTGACGAATCAGGGACATCAGAGGAGAGAGCGGCATTTATGATGGAGCTGGAGAGTTTTTACAGGGAAAACACATTGGAATTTAAACCTCCTAAATTTTATGGGGAGCCACTAAATTGTTTGAAGTTGTGGAGAGCAGTGATCAGATTGGGAGGCTATGATGTGGTGACCGCGGCCAAGTTGTGGCGACAAGTAGGCGAGTCTTTCCACCCTCCCAAGACTTGCACAACAGTCTCTTGGACATTCCGCATTTTCTATGAGAAGATGTTCTTTGATTTGGTTTTTTATTATGTGCAGGCACTTTTGGAGTATGAAAAGCATAAAAAGCAAATTGGGGAGCTTCAATTTCCTGTTGTTGGATCTCTTGTTCAGTCTGCGGGCATTGAAGAAGAGGGAAGTGGCTATCAAGCTCCTGGATCAGGTAGGGCAAGAAGGGATTCTGCAGCTCGAGCTATGCAGGGTTGGCATGCACAGAAACTTCTTAGTTATGGTGAGGTTGCAGAGCCTGTTATTAAGGACAAGAACTTGAATTCTACAGCAAAGCGTGAAAAGAATCTCAAAAGCATTGGTATGTTTCGAAGATTCATAAGACATTTGGTGCGTTTTCTAATCTTATGGAGTCTGACTGGTTGTTTGTCCAGTAGATTGATTACTACCATTGTCGATGTTGGTCAGCCAGCGGACTGGGTGAAGATCACTGTGCGTGAAACAAAAGATTCCTTTGAGGTATATGCTCTAGTTCCAGGACTTCTGCGTGAGGAGGTGAGAGTTCAGTCAGATCCTGCTGGACGACTAGTTATAACTGGGCAGCCACAGCAGCTGGATAATCCTTGGGGTATCACTCCATTTAAAAAGGTGGTGACCTTACCTGGCAGAATCGATCCACTTCAGACATCCGCTGTAGTCAGCTTACATGGCCGACTATTTGTACGTGTTCCGTTCGAGCGTGGATCTGTTTGA 975 45.33 MQMGEADESGTSEERAAFMMELESFYRENTLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTAAKLWRQVGESFHPPKTCTTVSWTFRIFYEKMFFDLVFYYVQALLEYEKHKKQIGELQFPVVGSLVQSAGIEEEGSGYQAPGSGRARRDSAARAMQGWHAQKLLSYGEVAEPVIKDKNLNSTAKREKNLKSIGMFRRFIRHLVRFLILWSLTGCLSSRLITTIVDVGQPADWVKITVRETKDSFEVYALVPGLLREEVRVQSDPAGRLVITGQPQQLDNPWGITPFKKVVTLPGRIDPLQTSAVVSLHGRLFVRVPFERGSV 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51590827 51596177 - Bda003844.1 Bda01g01577 1577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01577 324 Gene3D - 12 121 IPR036431 GO:0003677
Bda01g01577 324 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 2 321 IPR045147 GO:0006357
Bda01g01577 324 Pfam Hsp20/alpha crystallin family 239 319 IPR002068 -
Bda01g01577 324 Gene3D - 225 323 IPR008978 -
Bda01g01577 324 SUPERFAMILY HSP20-like chaperones 234 319 IPR008978 -
Bda01g01577 324 CDD ACD_sHsps_p23-like 239 318 - -
Bda01g01577 324 ProSiteProfiles ARID domain profile. 12 103 IPR001606 GO:0003677
Bda01g01577 324 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 2 321 - -
Bda01g01577 324 SMART bright_3 13 104 IPR001606 GO:0003677
Bda01g01577 324 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 223 324 IPR002068 -
Bda01g01577 324 SMART ARID_2 9 99 - -
Bda01g01577 324 Pfam ARID/BRIGHT DNA binding domain 15 110 IPR001606 GO:0003677
Bda01g01577 324 CDD ARID 14 110 - -
Bda01g01577 324 SUPERFAMILY ARID-like 10 104 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01577 - - - qsu:112029964 478.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01577 Bda-Chr1:51590827 Bda10g00275 Bda-Chr10:30342155 1.56E-73 dispersed
Bda01g01577 Bda-Chr1:51590827 Bda04g00200 Bda-Chr4:7331564 1.09E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g36 . . . . . . . . . . Cma01g02043 . Car01g01610 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01577 . . Bma01g00689 . . Cmo01g02101 . . . . . . Cpe02g00012 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda01g01577 . 7 291 ARID Transcription Factor Family AT1G20910 62.1 3.5e-92 335.5
Bda04g00200 . 41 352 ARID Transcription Factor Family AT1G20910 55.0 1.4e-85 313.5
Bda10g00275 . 3 154 ARID Transcription Factor Family AT1G20910 57.2 1.3e-43 174.1
Bda01g00466 . 16 338 ARID Transcription Factor Family AT1G76110 60.4 1.3e-103 373.2
Bda01g01577 . 5 321 ARID Transcription Factor Family AT1G76510 67.2 2.5e-115 412.5
Bda04g00200 . 49 382 ARID Transcription Factor Family AT1G76510 58.8 3.4e-104 375.6
Bda10g00275 . 3 184 ARID Transcription Factor Family AT1G76510 65.9 3.8e-63 239.2
Bda12g00990 . 42 334 ARID Transcription Factor Family AT3G13350 52.7 7.0e-83 304.3
Bda05g00623 CCT,ECH 1 769 ARID Transcription Factor Family AT3G43240 56.4 1.9e-248 855.5
Bda10g00892 . 2 783 ARID Transcription Factor Family AT3G43240 55.6 1.0e-246 849.7
Bda10g00889 CCT,ECH 2 803 ARID Transcription Factor Family AT3G43240 54.5 2.9e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15457 PF00011 HSP20 1.20E-05 CL0190 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01577 Bda_Chr01 FPKM 0.454106 0.307696 0.21752 0.210725 0.438354 0.273253 1.646928 0.517451 0.144475