Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01577 ATGCAGATGGGTGAGGCTGACGAATCAGGGACATCAGAGGAGAGAGCGGCATTTATGATGGAGCTGGAGAGTTTTTACAGGGAAAACACATTGGAATTTAAACCTCCTAAATTTTATGGGGAGCCACTAAATTGTTTGAAGTTGTGGAGAGCAGTGATCAGATTGGGAGGCTATGATGTGGTGACCGCGGCCAAGTTGTGGCGACAAGTAGGCGAGTCTTTCCACCCTCCCAAGACTTGCACAACAGTCTCTTGGACATTCCGCATTTTCTATGAGAAGATGTTCTTTGATTTGGTTTTTTATTATGTGCAGGCACTTTTGGAGTATGAAAAGCATAAAAAGCAAATTGGGGAGCTTCAATTTCCTGTTGTTGGATCTCTTGTTCAGTCTGCGGGCATTGAAGAAGAGGGAAGTGGCTATCAAGCTCCTGGATCAGGTAGGGCAAGAAGGGATTCTGCAGCTCGAGCTATGCAGGGTTGGCATGCACAGAAACTTCTTAGTTATGGTGAGGTTGCAGAGCCTGTTATTAAGGACAAGAACTTGAATTCTACAGCAAAGCGTGAAAAGAATCTCAAAAGCATTGGTATGTTTCGAAGATTCATAAGACATTTGGTGCGTTTTCTAATCTTATGGAGTCTGACTGGTTGTTTGTCCAGTAGATTGATTACTACCATTGTCGATGTTGGTCAGCCAGCGGACTGGGTGAAGATCACTGTGCGTGAAACAAAAGATTCCTTTGAGGTATATGCTCTAGTTCCAGGACTTCTGCGTGAGGAGGTGAGAGTTCAGTCAGATCCTGCTGGACGACTAGTTATAACTGGGCAGCCACAGCAGCTGGATAATCCTTGGGGTATCACTCCATTTAAAAAGGTGGTGACCTTACCTGGCAGAATCGATCCACTTCAGACATCCGCTGTAGTCAGCTTACATGGCCGACTATTTGTACGTGTTCCGTTCGAGCGTGGATCTGTTTGA 975 45.33 MQMGEADESGTSEERAAFMMELESFYRENTLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTAAKLWRQVGESFHPPKTCTTVSWTFRIFYEKMFFDLVFYYVQALLEYEKHKKQIGELQFPVVGSLVQSAGIEEEGSGYQAPGSGRARRDSAARAMQGWHAQKLLSYGEVAEPVIKDKNLNSTAKREKNLKSIGMFRRFIRHLVRFLILWSLTGCLSSRLITTIVDVGQPADWVKITVRETKDSFEVYALVPGLLREEVRVQSDPAGRLVITGQPQQLDNPWGITPFKKVVTLPGRIDPLQTSAVVSLHGRLFVRVPFERGSV 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51590827 51596177 - Bda003844.1 Bda01g01577 1577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01577 324 Gene3D - 12 121 IPR036431 GO:0003677
Bda01g01577 324 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 2 321 IPR045147 GO:0006357
Bda01g01577 324 Pfam Hsp20/alpha crystallin family 239 319 IPR002068 -
Bda01g01577 324 Gene3D - 225 323 IPR008978 -
Bda01g01577 324 SUPERFAMILY HSP20-like chaperones 234 319 IPR008978 -
Bda01g01577 324 CDD ACD_sHsps_p23-like 239 318 - -
Bda01g01577 324 ProSiteProfiles ARID domain profile. 12 103 IPR001606 GO:0003677
Bda01g01577 324 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 2 321 - -
Bda01g01577 324 SMART bright_3 13 104 IPR001606 GO:0003677
Bda01g01577 324 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 223 324 IPR002068 -
Bda01g01577 324 SMART ARID_2 9 99 - -
Bda01g01577 324 Pfam ARID/BRIGHT DNA binding domain 15 110 IPR001606 GO:0003677
Bda01g01577 324 CDD ARID 14 110 - -
Bda01g01577 324 SUPERFAMILY ARID-like 10 104 IPR036431 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01577 Bda-Chr1:51590827 Bda10g00275 Bda-Chr10:30342155 1.56E-73 dispersed
Bda01g01577 Bda-Chr1:51590827 Bda04g00200 Bda-Chr4:7331564 1.09E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15457 PF00011 HSP20 1.20E-05 CL0190 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01577 - - qsu:112029964 478.789