Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01580 ATGTGGGGATTTGGTGGGAGGTACTTCTGGGGTAGAAAAGAAAGATTTGCGAAAGTTGAGGGTATAGTAGTGGTGTTCGCATGGATGTCAAGTCAGGACAGGCACGTGAAGAGCTATGTCCAGCTTTATGAGTCTTTGGGATGGAATTCACTTGTCTGCCACTCTCAATTTCTCAATTTGTTCTTTCCCACAAAGGCAACCGAGCTGGCAATTGACATGCTTAATGCACTTACTGAGGAATTAAAGAGAAAGCCATGCCCAGTAGTATTTGCGTCGTTTTCTGGAGGGTCAAAGGCCTGTATGTACAAAATTTTTCAGATAATTGAGGGAAACTTTGAGGCACAAAAGAACGTGGATGATTATGGACTGGTTAGGGACTGTACTTCAGGCTTCATTTATGACTCTAGTCCAGTGGACTTTACTAGTGATTTGGGAACTCGATTTGTTCTTCATCCAAGTGTTCTGAAATTTTCTCATCCACCAAGATTGGCAAGTTGGATAGCATATTCTATTGGTTCGGGTCTTGATTCGCTTTTCCTCAGTAGGTTTGAGTCCCAGCGAGCGGAGTATTGGCAGACATTGTATTCCTCAACTAAATTTCAGGCTCCATTTCTTATTTTATGCTCGGAAGAGGACGATCTGGCACCTTATCAAACTATTTGTAATTTTGCTCAACGGCTACTAGATCTTGGAGCAGATGTTAAGTTGATCAAATGGAATGGGTCCCCTCACGTTGGTCATTACCGCCTCTTTCCAATAGACTACAAAGCTGCGGTGACTGAGCTACTCGGCAAGGCAGGCGGTGTGTATCGTCAAAAAATTAGACGACTCGAGGGAGAAAAAGTGGGTTTAGAGGGAGCACATGATGATATCCCAGAGACGATTGCCAATTTGCGGAATATGGCAGGAAGCTCCAGCAGTTTCCAAGGATTTGCTTTTACACCCAGTGGCCATTTTCTCTTGCCTAGCACAATGGAGTATATAGATGGAGCAGACTTCCAATCAATGCAAAATGGTAACAAGGAAGGTATGATCCACATCTCTAGTCTCCCAAGCATTAGCGCCCATGGTGTTCTTGGTCAAATCCTTTTCGATGTGTGTGTTCCAAAGAACGTTGAGGGCTGGGACATCAGGCCAACAGATTACTTAAATGGGCGACCATTCAGTAGAAATACTTCGTTCAATCCGATTAAATGTATACGCCGTTCAAGGTTATAG 1218 43.76 MWGFGGRYFWGRKERFAKVEGIVVVFAWMSSQDRHVKSYVQLYESLGWNSLVCHSQFLNLFFPTKATELAIDMLNALTEELKRKPCPVVFASFSGGSKACMYKIFQIIEGNFEAQKNVDDYGLVRDCTSGFIYDSSPVDFTSDLGTRFVLHPSVLKFSHPPRLASWIAYSIGSGLDSLFLSRFESQRAEYWQTLYSSTKFQAPFLILCSEEDDLAPYQTICNFAQRLLDLGADVKLIKWNGSPHVGHYRLFPIDYKAAVTELLGKAGGVYRQKIRRLEGEKVGLEGAHDDIPETIANLRNMAGSSSSFQGFAFTPSGHFLLPSTMEYIDGADFQSMQNGNKEGMIHISSLPSISAHGVLGQILFDVCVPKNVEGWDIRPTDYLNGRPFSRNTSFNPIKCIRRSRL 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51628296 51631668 + Bda003847.1 Bda01g01580 1580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01580 405 Gene3D alpha/beta hydrolase 144 250 IPR029058 -
Bda01g01580 405 Pfam Eukaryotic protein of unknown function (DUF829) 129 375 IPR008547 -
Bda01g01580 405 Pfam Eukaryotic protein of unknown function (DUF829) 22 124 IPR008547 -
Bda01g01580 405 SUPERFAMILY alpha/beta-Hydrolases 46 264 IPR029058 -
Bda01g01580 405 PANTHER UNCHARACTERIZED 1 305 IPR008547 -
Bda01g01580 405 PANTHER DUF829 DOMAIN PROTEIN 1 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01580 - - - jre:108987630 598.586
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01580 Bda03g00342 CCT
Bda01g01580 Bda03g00342 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01580 Bda-Chr1:51628296 Bda08g00825 Bda-Chr8:12382552 2.98E-147 dispersed
Bda01g01580 Bda-Chr1:51628296 Bda08g00889 Bda-Chr8:16044261 6.28E-148 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009167 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01580 Bda_Chr01 FPKM 0.205748 1.691603 0.918709 1.229267 2.165307 2.796637 2.253519 0.947625 0.886532