Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01588 ATGATGATCGGCCAACGGAACCGTCTCAATCCAACTATTCAGATCCCTGATTGGAACCCCCTTGATGATTCGACGGTGGTGGCTTCTCCGTTTTCTTCCATGAGTAGTCCCTCTGCTCTGGACCCTGTCATGGCGCTCCACCGTTTCCTCCCGTCTAGTGAGTCTGATTTCCCCAACAGGGAGATGGACGCTTTCTCGTGTGACCATTTCAGAATGTTTGAGTTCAAGGTAAGGATGTGCGCGCGGGGAAGGTCACACGATTGGACGGAATGTCCCTATGCGCATCCTGGAGAGAAGGCTCGCCGGCGAGATCCAGTGAAGTATCGTTACTCCAGCGCCTCGTGCCCTGATTTGCGGAAAGGTATTTGTAAGAAGGGCGATTCCTGCGAGTTCGCTCACGGAGTCTTCGAGTGTTGGCTACATCCGGCTCGGTACCGGACTCAGCCGTGCAAGGATGGGATAGGTTGCCCTCGGCGGGTGTGTTTCTTCGCACACTCGGCGGAACAACTCCGTGTCCTTCCTCAGCAGAGTCCTATGGTTCACGGATCTACCGAGTCCTTCGAAGGATCTCCGATTCGTCGGGCGTTTGAAATTAACATGACTAAGGGGTACCCTTCTCTGTCATCGCCAACGTCAATCTTGAACTCACCGCCGTTATCTCCTTCCGACTCCCCGCCAATGTCTCCCGTCAGCTCTCAAGTCGGCGGCGGATTCGGATCGCCTAAGTCTGTCTATGAACTTCTCACTTCAATGCGTAATCTTCACGTTGGCAATACGAAATCAAGCCGTCAAAGAGAGAAACCATCGTTTAGTTCTCTTCGCAGTTCCACTCTCCGACCTGCTTTCTGTGATTCTCCTACGCAGACCCATATTCCGGCTCGCTCCGGAGGGAGTTTCTGTGATTTTTGGGACCAAGCTTTAATGGAAGATCCTGCAGTGGAGAGGGTGGAGTCTGGAAGAGACATCCGCGCACAAATGTATGTCAAACTCAGTCAGGAAAACTCACTCGGCTCAGGCGACCCGGCTCCTGATATTGGGTGGGTCTCCGAGTTAGTCAAGTAA 1062 53.11 MMIGQRNRLNPTIQIPDWNPLDDSTVVASPFSSMSSPSALDPVMALHRFLPSSESDFPNREMDAFSCDHFRMFEFKVRMCARGRSHDWTECPYAHPGEKARRRDPVKYRYSSASCPDLRKGICKKGDSCEFAHGVFECWLHPARYRTQPCKDGIGCPRRVCFFAHSAEQLRVLPQQSPMVHGSTESFEGSPIRRAFEINMTKGYPSLSSPTSILNSPPLSPSDSPPMSPVSSQVGGGFGSPKSVYELLTSMRNLHVGNTKSSRQREKPSFSSLRSSTLRPAFCDSPTQTHIPARSGGSFCDFWDQALMEDPAVERVESGRDIRAQMYVKLSQENSLGSGDPAPDIGWVSELVK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51730347 51731408 + Bda003855.1 Bda01g01588 1588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01588 353 ProSiteProfiles Zinc finger C3H1-type profile. 109 136 IPR000571 GO:0046872
Bda01g01588 353 PANTHER UNKEMPT FAMILY MEMBER 7 353 IPR045234 -
Bda01g01588 353 Gene3D - 106 178 - -
Bda01g01588 353 SMART c3hfinal6 144 167 IPR000571 GO:0046872
Bda01g01588 353 SMART c3hfinal6 109 135 IPR000571 GO:0046872
Bda01g01588 353 MobiDBLite consensus disorder prediction 207 235 - -
Bda01g01588 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 134 IPR000571 GO:0046872
Bda01g01588 353 SUPERFAMILY CCCH zinc finger 108 138 IPR036855 GO:0046872
Bda01g01588 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01588 Bda-Chr1:51730347 Bda01g02031 Bda-Chr1:56597951 3.28E-118 dispersed
Bda11g01075 Bda-Chr11:10492883 Bda01g01588 Bda-Chr1:51730347 4.98E-07 dispersed
Bda01g00607 Bda-Chr1:33068489 Bda01g01588 Bda-Chr1:51730347 1.55E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15460 PF00642 zf-CCCH 1.30E-05 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01588 - - vvi:100247549 397.127