Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01589 ATGGAGTCTGCTGGTGTTTTTCCTGATGGAGAATGGGACTCTTTCAGTTCAATTTTCGACTCTGACGAGGTCAATTCGCTGCCTTGCTATCTCGGAAACTTTCCGTTGCTGGAAAATTATGATGCCGGCCTGAATTCTGCACCGCAGACATGCTTCGATCCTCTTGCCAGTATAGGTGTTCATGGGGCTAACAAGAGCTGGTGCAATTCGCTTGATGCTTTGACTGCTGATTTCAACCTGAGCAAACATAATTATCGCCACAGTTCGTATCACACTTTCCAACCAAATGATATTTCTATTTTCATTGATATGAATTCAATGGGTGTTAAAGAGACTGGTTCATTCCCGCCATCTCTGACTGAAAATTTAGAGGAAGATCATCATCGAGCTCTATGTTTGGGTGGCCATATAGGTAGTCAAGGATATGAGAATTTAGACTATAATCTTCCAACCTCGACGGCTATAAAATCCAGCGACGAAGAAGAAAAACTCAAAAGGAAGCTAAATGGTAGAGCGCAGAATACACAGTTAGCCTACAACGCAAAGAAGAAAAATCGAGTCTCGCAGCGTGTAAGGCTTAACGTGAAGAATTCTTCACAAACCAGTGTTCAAGAAGACGGTAATGGAGGATCCGAAGGACAGAGGTCCAGTAGTTATAGTACAGATGACGAAAATGCTTCACGTGATACCAATGGTGGTGCAACTTCAGCGTCTAAAAGGGGGGAAGTTCTCAACTCCAACGGAAAATCAAGAGCTGCAAGAGGGTCAGCTACTGATTCTCAAAGTATCTACGCAAGAAAACGAAGAGAGAGAATAAATGAGAGACTCAGAATCTTGCAAAAACTCGTTCCTAATGGCACAAAGGTCGATATAAGCACAATGCTCGAAGAAGCAGTTCACTACGTGAAGTTTCTGCAGCTTCAAATCAAGATCTTAAGCTCTGACGATCACTGGATGTATGCTCCAATCGCATACAATGGAATGGACATTGGTCTGCACCAGAAGATCTCTCCATTTCAATTCAATTGA 1029 42.76 MESAGVFPDGEWDSFSSIFDSDEVNSLPCYLGNFPLLENYDAGLNSAPQTCFDPLASIGVHGANKSWCNSLDALTADFNLSKHNYRHSSYHTFQPNDISIFIDMNSMGVKETGSFPPSLTENLEEDHHRALCLGGHIGSQGYENLDYNLPTSTAIKSSDEEEKLKRKLNGRAQNTQLAYNAKKKNRVSQRVRLNVKNSSQTSVQEDGNGGSEGQRSSSYSTDDENASRDTNGGATSASKRGEVLNSNGKSRAARGSATDSQSIYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKILSSDDHWMYAPIAYNGMDIGLHQKISPFQFN 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51739577 51741134 - Bda003857.1 Bda01g01589 1589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01589 342 SMART finulus 262 311 IPR011598 GO:0046983
Bda01g01589 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
Bda01g01589 342 Gene3D - 255 317 IPR036638 GO:0046983
Bda01g01589 342 MobiDBLite consensus disorder prediction 166 266 - -
Bda01g01589 342 MobiDBLite consensus disorder prediction 191 262 - -
Bda01g01589 342 CDD bHLH_AtIND_like 257 319 - -
Bda01g01589 342 PANTHER TRANSCRIPTION FACTOR BHLH54 4 338 - -
Bda01g01589 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 322 IPR036638 GO:0046983
Bda01g01589 342 Pfam Helix-loop-helix DNA-binding domain 266 306 IPR011598 GO:0046983
Bda01g01589 342 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00587 Bda01g01589 CCT
Bda01g01589 Bda01g00587 ECH
Bda01g00587 Bda01g01589 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01589 Bda-Chr1:51739577 Bda01g01945 Bda-Chr1:55838157 9.53E-20 dispersed
Bda07g00701 Bda-Chr7:8272557 Bda01g01589 Bda-Chr1:51739577 2.09E-07 dispersed
Bda10g00844 Bda-Chr10:42835826 Bda01g01589 Bda-Chr1:51739577 5.90E-18 dispersed
Bda07g01091 Bda-Chr7:12799053 Bda01g01589 Bda-Chr1:51739577 1.08E-24 transposed
Bda08g00680 Bda-Chr8:7225733 Bda01g01589 Bda-Chr1:51739577 6.21E-42 transposed
Bda12g00192 Bda-Chr12:1825543 Bda01g01589 Bda-Chr1:51739577 4.81E-25 transposed
Bda01g00587 Bda-Chr1:32876628 Bda01g01589 Bda-Chr1:51739577 1.66E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15461 PF00010 HLH 8.60E-09 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01589 - - qsu:112027126 255.373