Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01590 ATGGCTCTTGAAGCTCTTACCTCTCCCTTCGCGCCGTCGCCGGTGTTTCAGTGCGATGGTCCGGATCTCAACTGCTTGGAACCATGGACGAAGGGGAAGCGGTCCAAGCGCCCGCGTTTAGACGGCGCAGAGACGGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGCGGCGGTGCTTCCTTTTCGACTCAGCCGAAAACTGCTGCTCCGTCCACACCGAAGCTCAACTACAAGTGTTCTGTTTGCGATAAGGCGTTTTCGTCGTACCAGGCTTTGGGAGGGCACAAGGCGAGCCACCGGAAACTTGTTGGTGGAGAAGATCGATCGATGTCGTCCACTGCGACGACGACTTCTGCTTTAACCGCAGCGACCTCCGGTTCAGCTTCTATAGCTGGAGTAAGAACTCACGAATGCTCTATTTGCCAGAAGTCGTTTCCGACGGGGCAGGCCTTGGGTGGACACAAGCGGTGCCACTACGAAGGCGGCAATAAATCTAGCAGCGCCACGGTGACTTCGTCGGAAGGAATCGGCAGCTCCAGCCACATCCGAGGCTTCGATCTGAACCTCCCTGCTTTGCCGGAATTCGCACCGAAATTCCTGGTCTCCGGCGACGACGAGGTAGAGAGCCCTCTACCCACAAAAAAACCCCGTCTTTTGACGCAACCAAAGATGGAAATCTCTCAAGATCATTGA 702 55.84 MALEALTSPFAPSPVFQCDGPDLNCLEPWTKGKRSKRPRLDGAETEEEYLALCLIMLARGGASFSTQPKTAAPSTPKLNYKCSVCDKAFSSYQALGGHKASHRKLVGGEDRSMSSTATTTSALTAATSGSASIAGVRTHECSICQKSFPTGQALGGHKRCHYEGGNKSSSATVTSSEGIGSSSHIRGFDLNLPALPEFAPKFLVSGDDEVESPLPTKKPRLLTQPKMEISQDH 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51752480 51753181 + Bda003858.1 Bda01g01590 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01590 233 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Bda01g01590 233 SMART c2h2final6 80 102 IPR013087 -
Bda01g01590 233 SMART c2h2final6 139 161 IPR013087 -
Bda01g01590 233 Gene3D Classic Zinc Finger 78 161 - -
Bda01g01590 233 Pfam C2H2-type zinc finger 139 162 - -
Bda01g01590 233 Pfam C2H2-type zinc finger 80 104 - -
Bda01g01590 233 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Bda01g01590 233 SUPERFAMILY beta-beta-alpha zinc fingers 80 161 IPR036236 -
Bda01g01590 233 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 224 IPR044653 GO:0003700
Bda01g01590 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Bda01g01590 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Bda01g01590 233 MobiDBLite consensus disorder prediction 206 233 - -
Bda01g01590 233 PANTHER ZINC FINGER PROTEIN ZAT10 1 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01590 Bda-Chr1:51752480 Bda15g00465 Bda-Chr15:7722029 3.56E-45 dispersed
Bda01g00586 Bda-Chr1:32871523 Bda01g01590 Bda-Chr1:51752480 8.49E-98 wgd
Bda01g01590 Bda-Chr1:51752480 Bda03g00187 Bda-Chr3:1528419 5.68E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15462 PF13912 zf-C2H2_6 3.80E-12 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01590 - - tcc:18591995 276.944