Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01592 ATGAATGATGCAGAAATATTGACTCTGAGGAGGGACTATCATGCAACAACGCAGATGGAAGCTTCTAGCCAGACTGGAGATACTAACAGTCAAGTACAATCATCTAGGCATGAACAAAATTCATTTGACAAGCGAGTGAAGCAAGAGCCATCAAATGCTGAGAGTAAGCAGCTACATAGTGATGTCATCCTAGCACAACAGCTACAGTCCCAGGATGATCAGAAATACGAGCAAGCAGATGAGGTTCCCAGCCAGATTCCCCATATGGCCAGGGTTCCAAGAGCTGAAAGTGTTCCAACACTTGACGACGAATCTGACAGAATGCTGAATCAAGACAGTGAATCTCAATGTTTAAAACGTCAAAAGATGAGTAATCAACAGGCAACTATCTTAGATAGGGCAAGTAACCAGATCAATCGTGTCGGTGGTAAGCAGGTTCCATTTGCTGTGCTCCTGCCTGTATTGTTGCCCCAGCTTGACAAAGACAGAGCGATACAACTTCAAACTTTATTTAACAAGCTAAAGAAAAATGAGATTACAAAAGATGATTTTGTGCGGCTCCTGAGAAACATCGTGGGAGATCAAATGCTCAGATTAGCTATTTCCAAAGTTCATTTCCAGTCTGCTACCAACCATTTTCAGTTGCAGCCTCCCCCCGCAGCACAACAGCTTCCTCCAAGGACAGTATCTTTAAGCACTGGTGCTCCAGATTTCACCGATCCGCAACCATCCGCACAATTTCATCAGAAAGACGTCAACTCTTCAGCTATTTCAAATCTTCACTTATCAGCAGCCCAAGGAAAGCCTGATACTGGCTATGTGAAAATAGAAGACAACGAACAATCGTCTCAAGAAGTGGAACGACAAAGTACAAGAGGTGGTTTGTCTTCTTCCATTTCAGGTACTAAAAATCAACGAAGGGGCCAGTCATCACTTACTTCACAAGAATTAGAAAAGCCTCTGCAACAGCAGCCACCAATTCAACTAATACATTTTTCTATTTATGGAGCGGGAAGTAGTACTGGAAATTATCACCCATCCTTAGGGACAAGCATCACCACTTCTGCATCATCTTTTAAACCACCATCTGTTGAGTTACAGCAGGTTCCTCAACACCGGAGCATTTCAGCTCAATTAGCTGGGAATCTGTCAGGCACAAACATGGTAAAAATTTCAAATCATAATCTTAACTCTCTATATAGAGAAACTTTTGAGAATTTTTTGACCATCAATAAAGTTATCCCTACTTTGATAGTTATTTCTCTGTTTTTTTTTTTTTCGTTTCGATTACGAAACAAAATTTCTATTTCACCTTTTGTTTTTTCGCATTTTGTTTGTTGGCAATCATCAGCAGACCAAAAGCAGAGTTCAGGCCCTTTGTCATCTATAAGAATGAAGTTACCAGGGATAACTTCTAATTTACTAGGGTTGGGAAATGGAACAGCTGGAACTATAAAGGATGAGTCTTTCGAGAAGCAGCCTTCAAAAATGGGGTTTCCCACTTCTATTGGTGGTCCTTCAACATCTGAAACTGTTTTTTCCTCTAATACAATTTCCCCAAATGCAAGCTCGCAAATTGACTCCAATGCGTTAGGGGCTCGGATTCCTTCTACTGCTGTTGCTTCTGGGGTTAATAGGACTCCTCCAAAGAAACCTTTAATTGGCCCAAAAAAACCACTTGAAACAGCTGGTGCTTCACCACCTTCATCGAGCAAGAAGCAAAAAGTCACTGGTGCCTTTTTGGATCAAAGCATTGAACATCTCAATGATGTCACAGCTGTCAGTGGAGTTAACATTAGGGAAGAAGAAGAGCAGTTATTTTCCCGCGTAAAGGAGGACATTCGACTGTCCGAAGCATCACGAAGGATTGCGCAAGAAGAAGAAGAAAGACTTATCTTACAGAAATCACCATTACAGAAAAAACTGTCTGAAATTATGGTCAAATTTGGTCTGAAGGGTATGAGCAACGATGTTGAGAGATGTATTTCATTGTGCGTAGAGGAGCGAATGCGTGTTTTTATAAGTAATTTAATCAGATTGTCAAAACAGAGGATTGATGCGGAGAAGTCAAGACACATAACCTTTGTCACTTCTGATGTACGACGACAAATTATGATGATGAATTGGAAGGTGAAAGAAGGATGGGAGAAGGAACAGGCAGAAGTAGAAAAACTCAGGAAGCTTAACGAAACTGAGGACAGCAGTGGAAGAGCTGCTGAAAAGGGGAAAGATGATGGTCGTACTAAGTTGGCGACGGTGAATCGAGATGAAGATGACAAAATGAGGACGACAGCTGCGAATGTTGCTGCACGTGCCGCTGTTGGAGGGGATGACCTGCTTTCAAAATGGCAACTTATGGCTGAGCAAGCTCGACAAAAACGCGAAGGAGGTTCGGACGGACATGGAGTGGCACCCTCTTCTCAGCCTCTTAAAGACGTTGCTCGCATGCCTGTGTCAACTTTGAGAAGAAGGGACAATCAAGAAGAAGAGAAAAAGGGAGATGGGAGCCACGTTTCTCCCTCTGGGCCTATTAGAAAGTTTGGAAGGAACCAAGTGGGAGTGTCTCCAAGCATATCCGCTAAAGATGTGATTGCCGCGCTGGAAAGAGAACGGCAAATGTCGACATCCACCCTCATATATCGATTATATGATAAAGTTCGGTTTGATCATGTCACTTAA 2679 42.4 MNDAEILTLRRDYHATTQMEASSQTGDTNSQVQSSRHEQNSFDKRVKQEPSNAESKQLHSDVILAQQLQSQDDQKYEQADEVPSQIPHMARVPRAESVPTLDDESDRMLNQDSESQCLKRQKMSNQQATILDRASNQINRVGGKQVPFAVLLPVLLPQLDKDRAIQLQTLFNKLKKNEITKDDFVRLLRNIVGDQMLRLAISKVHFQSATNHFQLQPPPAAQQLPPRTVSLSTGAPDFTDPQPSAQFHQKDVNSSAISNLHLSAAQGKPDTGYVKIEDNEQSSQEVERQSTRGGLSSSISGTKNQRRGQSSLTSQELEKPLQQQPPIQLIHFSIYGAGSSTGNYHPSLGTSITTSASSFKPPSVELQQVPQHRSISAQLAGNLSGTNMVKISNHNLNSLYRETFENFLTINKVIPTLIVISLFFFFSFRLRNKISISPFVFSHFVCWQSSADQKQSSGPLSSIRMKLPGITSNLLGLGNGTAGTIKDESFEKQPSKMGFPTSIGGPSTSETVFSSNTISPNASSQIDSNALGARIPSTAVASGVNRTPPKKPLIGPKKPLETAGASPPSSSKKQKVTGAFLDQSIEHLNDVTAVSGVNIREEEEQLFSRVKEDIRLSEASRRIAQEEEERLILQKSPLQKKLSEIMVKFGLKGMSNDVERCISLCVEERMRVFISNLIRLSKQRIDAEKSRHITFVTSDVRRQIMMMNWKVKEGWEKEQAEVEKLRKLNETEDSSGRAAEKGKDDGRTKLATVNRDEDDKMRTTAANVAARAAVGGDDLLSKWQLMAEQARQKREGGSDGHGVAPSSQPLKDVARMPVSTLRRRDNQEEEKKGDGSHVSPSGPIRKFGRNQVGVSPSISAKDVIAALERERQMSTSTLIYRLYDKVRFDHVT 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51765306 51770855 + Bda003861.2 Bda01g01592 1592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01592 892 MobiDBLite consensus disorder prediction 55 73 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 279 323 - -
Bda01g01592 892 Pfam Transcription initiation factor TFIID component TAF4 family 588 882 IPR007900 GO:0005669|GO:0006352
Bda01g01592 892 MobiDBLite consensus disorder prediction 817 836 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 11 106 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 541 574 - -
Bda01g01592 892 CDD TAF4 583 881 IPR007900 GO:0005669|GO:0006352
Bda01g01592 892 Pfam RCD1-SRO-TAF4 (RST) plant domain 144 205 IPR022003 -
Bda01g01592 892 MobiDBLite consensus disorder prediction 225 250 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 788 852 - -
Bda01g01592 892 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 319 886 IPR045144 GO:0005669|GO:0006352
Bda01g01592 892 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 18 315 IPR045144 GO:0005669|GO:0006352
Bda01g01592 892 MobiDBLite consensus disorder prediction 38 54 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 727 759 - -
Bda01g01592 892 Coils Coil 609 636 - -
Bda01g01592 892 PANTHER IP01149P-RELATED 319 886 - -
Bda01g01592 892 PANTHER IP01149P-RELATED 18 315 - -
Bda01g01592 892 Gene3D Histone, subunit A 633 678 IPR009072 GO:0046982
Bda01g01592 892 ProSiteProfiles RST domain profile. 139 210 IPR022003 -
Bda01g01592 892 MobiDBLite consensus disorder prediction 215 250 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 15 37 - -
Bda01g01592 892 MobiDBLite consensus disorder prediction 286 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01592 K03129 TAF4; transcription initiation factor TFIID subunit 4 - zju:107420572 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01592 Bda-Chr1:51765306 Bda08g01359 Bda-Chr8:54080344 3.24E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00865 . . Bda01g01592 . Bpe05g00040 Bma01g00675 Bma05g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004131 2 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01592 Bda_Chr01 FPKM 19.399893 20.867741 14.553028 17.402351 13.823142 13.076186 15.627558 13.221362 13.67155