Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01606 ATGGAAATGGAGAGTTCGGAGCTCAGGGTCTTCTTCTTGCACTATTTTACAGCAAGCCAATTGATCCCACTCGTCGACTTCGCTAAGCTAATGGCTTCATGGGGAGTTTCAGTCCATATCATCACCACTTTCGGCAACGCTCTTCTGTTCGAGTCCTCTATAGATCCAGACAGCTTCACAGGCCGCCATATTTTCATTCGCAAACTCAAATTTCCATCGGAGAAATCTCCGGTGGGAATCAAGTACATTAACAGAAAAACTCCATCGGAGATGACCTCCAAGATCTTTTTAGGAATTCATATCCTGCAAAAACAAATGGAACAAATACTCAGAGACTCTAAACCTGATTGCATTGTCTCAGACATGTTCTTCCCGTGGACTGTCGACGTCGCCGAAGAGCTCGGGATTCCAAGGATCTCCTTCAATCCGTCTGGATTATTTTCTCTCTGCCTCATCCATGCCTTGAAATCTTATGCTCCTCACGCGAAGGTGCACTCTAAGAAACAAAGATTTCTGATCCTCGGCCTACCCGACCAAATTCAGATGATGAAATCTCAGCTTCCAGACCATATGAAAACGAAGGCTGCATATGGAGAGATCCTAGATAAAATAGAAGCAGCAGAGAAAAGAAGCTTTGCAACTATCGTGAACAGCTTCTCAGAGTTAGAAGGTAATTACCTCGGGTATTATAAAGAGTTTCTTGGCAAAAATGTCTGGCAAGTAGGCCTTTCTTTTCTCTTCTGCAACAGAGAACACATTACAAGGGGACCCTACACCACCGTTGACACAGAGCGAGAAAATTGCTTAGTCTGGCTCGATTCTCAAAAAGAGAACTCGGTTTTGTACATTTGTTTCGGTAGTATGAAAGAGATCGGTTTAGCTTTAGAAACTTCATCACTGCCGTTCATCTGGGTAGTTGGATTCAAAAGTGATTATCCAGACAAAGATAACTGGTTTCCCAAAGGGTTGGAGAAGAAGATAGCCGAGGAAGACAGTGGGATGATCATACGTGGGTGGGCCCCTCAATTTCAGATTCTTAATCACCGTTCGATCGGAGGATTCGTAACTCAGTGTGGATGGAATTATATAATGGAGGGTGTCACTGCTGGAAAACCATTAATCTCGTGGCCTCTTTTTACAGAGCAATTCTACAACGAGAAGCTAATTACTGAGGTATTGAAGATTAGAGTTGAAGTTGGAGCAGAGGACTATAACAAGAGTCCTGTTGTTAAGGAGAAAATTTGCAACTCGATCACCCGTTTGATGGGTGGTTCCGGAGAGGCTAGAGAATTCAGATGGCGCTCGGAGAAGCTCCGAGAGAGGGCCAAGCTGGCTGTCGAAAAAGGTGGGTCATCTGATTCTGATCTAACGGCTTTAATTTCACAACTGAAGGCCGAAACATGTGCAAGAACATAA 1416 44.07 MEMESSELRVFFLHYFTASQLIPLVDFAKLMASWGVSVHIITTFGNALLFESSIDPDSFTGRHIFIRKLKFPSEKSPVGIKYINRKTPSEMTSKIFLGIHILQKQMEQILRDSKPDCIVSDMFFPWTVDVAEELGIPRISFNPSGLFSLCLIHALKSYAPHAKVHSKKQRFLILGLPDQIQMMKSQLPDHMKTKAAYGEILDKIEAAEKRSFATIVNSFSELEGNYLGYYKEFLGKNVWQVGLSFLFCNREHITRGPYTTVDTERENCLVWLDSQKENSVLYICFGSMKEIGLALETSSLPFIWVVGFKSDYPDKDNWFPKGLEKKIAEEDSGMIIRGWAPQFQILNHRSIGGFVTQCGWNYIMEGVTAGKPLISWPLFTEQFYNEKLITEVLKIRVEVGAEDYNKSPVVKEKICNSITRLMGGSGEAREFRWRSEKLRERAKLAVEKGGSSDSDLTALISQLKAETCART 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51909412 51920708 - Bda003878.1 Bda01g01606 1606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01606 471 PANTHER GLYCOSYLTRANSFERASE 5 467 - -
Bda01g01606 471 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 102 390 IPR002213 GO:0008194
Bda01g01606 471 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 463 - -
Bda01g01606 471 Gene3D Glycogen Phosphorylase B; 258 444 - -
Bda01g01606 471 Gene3D Glycogen Phosphorylase B; 15 456 - -
Bda01g01606 471 CDD GT1_Gtf-like 8 452 IPR002213 GO:0008194
Bda01g01606 471 PANTHER GLYCOSYLTRANSFERASE 5 467 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01606 - - - mcha:111012704 455.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01606 Bda-Chr1:51909412 Bda15g00041 Bda-Chr15:1856579 1.61E-93 dispersed
Bda01g01606 Bda-Chr1:51909412 Bda03g01702 Bda-Chr3:56440349 1.36E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1118 . Cone10ag1005 . . . . . . . Bda01g01606 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015264 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 4 0 2 1 0 0 11
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01606 Bda_Chr01 FPKM 26.147697 29.522795 18.023851 17.366787 11.901354 11.431999 12.475224 23.31123 23.349211