Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01607 ATGCAAGGGCAACGTGGTGGTGTTGGCTCCTTGCCAGAAACATTGAATTTTGATCATGGCTCTTCATCGGGTAATACTGCTGTAGATCAGCAAATTTGCCGGAATAATAGGCGGAATCCTTCAGAAAACCGAATATCTGACTACTTATTGTTGCAGCAAAGTGATGTAAACTTATCTTATGTTAACGCAGTGGGCAGGGAGCAAGAGAGCTTGGCCAGATGGTCCATAGGTGAACCTAGCTCTAGTGGTGCAGCCATTGAAATGGGTTGTGATGAGCGGAAAGCAGAGCTTGGATGGACCTCAGCAACCCCTTGTGTGGGAGATTGTCCGATACTTGATGACCTGCGGTATGGAGCATCTAATAATTTTCCAATGGACAATGTCAGTGTGAATCCACTGTTTATACAAGGTTCCCATTCAGGTGCAATTCCACCAAATCTTAGCTTGAATGCAGGTTACATTAGTCACAATGTCACTGAATGCCCTATTATTTTCAAGGCTAGTGGATTAGAAAATGAGGGAATTCCACCCACAAGTGGTTCGGACAATTTCGTCTCTCCTTTTGAAAGTGGTATTTTATCGCTTGAAGGGAGTCATGGCAGACCAGGCTCCTCAATGGAGGGTCGTCGTTTATCTTGCAAAAGAAAGGCATTTGAAGGTTCCTCCGTTGGTGGAAGCACTAGCTATTCGCAATCCGCTGATAAAACTGTAATTCCCTCTTGCTCTAACACAAGCACCAATTTCGTATCGTCTGCTCTGCCTGAGCAAGCGAATCAAAGGTTAAGACTTGGTGTAAGAGAAGTAATTCCGGATGGCCTTTCTGATTGTAATGTCGCTGAAACCAGTGAAAATGCCCATAGAAATTTCCATATGAGGATTAGTTCCTCAAATCAATCAAGTTCAACTCATCCTAACACGACATCATCAGGAAGTGCAAGGCATTCTGGGATCTCATCTTCTCAAGCACCTAACAGGCTTCTTCCTGTCAACCATTCTCCAAATTTAAGGTCAGCACCAGCCACCGATAATGCAACTACTCAAAACCCACCATTTGTTCTTCGTGTTCCTGCTTTGCCTCGAAGTGTGCCAACTTCCAGGGTGAGTGGGGGGAGGGAGAGTTTGCATTCAAGAACTGGTGGTTCACTCGGCTTGGTTGGTGATAGACTTGATCTGCACCGTGAGGATGCCACCTCAAGTAGCACAGCAAGAATTATATTGGAAAATCCTCTGTTTATACCAGCAACTGAATCAAGAAATCCAACTCGAAATCCGCCAAATCGACGTAGACATGGTGGAAACTTGATTATTCCTGGCAATGTTCCATCTATGTCTAGGACCAGATCCACTATGGTGACTCATCCACCATCTGGCTCTTGGCTTCCTCATGAGAATTCTCTTCCTCCACAATATCCAACGCGATTGTCAGAATATGTTCGTCGACAATTGTTTTCTTCAACTTTGGAGTCTGGTGGGGGCCAGCCAAATAATCTTCCATCATTAAATTCAGCTCCCTTCTCTCAAGATATGCTTCTCTCTGGAGCTGGTAACCAGGGACATCATTCATCACTCCCCAGAGCCATGCCGTGGATCGAGAGACAAAGTGAAGGGGCACTTGGTATTCCATATTCCTTGCGATCTATAGCTGCTCCTGGTGAAGGTAGTGGAGGCCATAGATTCGTATCAGAGCAGATTCGCAACGTCTTAGGTCTCATGCGTCGAGGCGAGAACTTACGAATTGAGGATGTTATGATCCTTGATCAGTCTGTATTATTTGGGGTGGCTGACTTTCACGATCGCCACCGAGACATGCGCCTCGATGTAGATAACATGTCATATGAGGAGTTATTGGCTCTAGAAGAGCGAATTGGAAATGTGAGCACTGGGCTTTCCGAAGACACAATTCTAACTCGCCTTAAACAGAGCAAATGTGCTCCTGTCTTAGGATCTCCAATGGAGGAAGAACCTTGCTGTATTTGTCAAGAGGAATATATCGAGGGAGAGGATGTCGGGAAGTTAGATTGTGGGCATGATTATCACACCGGCTGTATCAAGCAGTGGCTGATGATCAAGAATTTGTGTCCAATTTGTAAAACAACTGCACTGGCAACCTAA 2112 45.22 MQGQRGGVGSLPETLNFDHGSSSGNTAVDQQICRNNRRNPSENRISDYLLLQQSDVNLSYVNAVGREQESLARWSIGEPSSSGAAIEMGCDERKAELGWTSATPCVGDCPILDDLRYGASNNFPMDNVSVNPLFIQGSHSGAIPPNLSLNAGYISHNVTECPIIFKASGLENEGIPPTSGSDNFVSPFESGILSLEGSHGRPGSSMEGRRLSCKRKAFEGSSVGGSTSYSQSADKTVIPSCSNTSTNFVSSALPEQANQRLRLGVREVIPDGLSDCNVAETSENAHRNFHMRISSSNQSSSTHPNTTSSGSARHSGISSSQAPNRLLPVNHSPNLRSAPATDNATTQNPPFVLRVPALPRSVPTSRVSGGRESLHSRTGGSLGLVGDRLDLHREDATSSSTARIILENPLFIPATESRNPTRNPPNRRRHGGNLIIPGNVPSMSRTRSTMVTHPPSGSWLPHENSLPPQYPTRLSEYVRRQLFSSTLESGGGQPNNLPSLNSAPFSQDMLLSGAGNQGHHSSLPRAMPWIERQSEGALGIPYSLRSIAAPGEGSGGHRFVSEQIRNVLGLMRRGENLRIEDVMILDQSVLFGVADFHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEDTILTRLKQSKCAPVLGSPMEEEPCCICQEEYIEGEDVGKLDCGHDYHTGCIKQWLMIKNLCPICKTTALAT 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51923084 51926529 - Bda003879.1 Bda01g01607 1607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01607 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 702 IPR045191 GO:0061630
Bda01g01607 703 MobiDBLite consensus disorder prediction 486 519 - -
Bda01g01607 703 SMART ring_2 656 696 IPR001841 -
Bda01g01607 703 CDD RING-H2_TTC3 655 697 - -
Bda01g01607 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 702 - -
Bda01g01607 703 MobiDBLite consensus disorder prediction 293 350 - -
Bda01g01607 703 MobiDBLite consensus disorder prediction 486 522 - -
Bda01g01607 703 MobiDBLite consensus disorder prediction 415 464 - -
Bda01g01607 703 Pfam Ring finger domain 656 697 IPR001841 -
Bda01g01607 703 MobiDBLite consensus disorder prediction 293 379 - -
Bda01g01607 703 MobiDBLite consensus disorder prediction 439 464 - -
Bda01g01607 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 701 IPR013083 -
Bda01g01607 703 SUPERFAMILY RING/U-box 651 700 - -
Bda01g01607 703 ProSiteProfiles Zinc finger RING-type profile. 656 697 IPR001841 -
Bda01g01607 703 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01607 - - - zju:107419992 679.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01607 Bda-Chr1:51923084 Bda08g00820 Bda-Chr8:12232030 2.68E-61 dispersed
Bda02g00637 Bda-Chr2:47300971 Bda01g01607 Bda-Chr1:51923084 3.00E-19 dispersed
Bda08g00867 Bda-Chr8:15144622 Bda01g01607 Bda-Chr1:51923084 1.70E-15 dispersed
Bda05g00779 Bda-Chr5:56260308 Bda01g01607 Bda-Chr1:51923084 1.55E-37 transposed
Bda11g01777 Bda-Chr11:52613344 Bda01g01607 Bda-Chr1:51923084 4.93E-30 transposed
Bda01g01607 Bda-Chr1:51923084 Bda08g01369 Bda-Chr8:54281764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g742 . . . . . . . . . Cmo12g00503 . . . Car12g00516 . . Cpe07g00492 Bhi04g00371 Tan02g1796 . . Hepe08g1297 . Lcy13g2093 . . . . . . . . . . . . . . Cme03g02064 Blo17g00874 . . Bda01g01607 Bpe02g01796 . Bma01g00659 . . . . Cma12g00560 . . . . . . . . . . . . . . . . . . . . . Chy03g01557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01607 Bda_Chr01 FPKM 5.493783 7.05756 1.671882 1.438749 0.440409 0.571266 0.766827 2.21003 2.81472