Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01608 ATGGCGCAGATTCAGGTTCAACATCAGACTCCGATGGCCGGTGCTGGTGCTAATGGCGTGGCCGTAGCTGCCGGAGGGAGTCCAGGGGGATCTCCATTCGTCCCGACGTCGCTTTATGTTGGAGATCTTGACGTAAACGTCACTGACTCGCAGCTTTATGATCTGTTCAATCAAATGGGTCAGGTTCTGTCTGTTCGAGTCTGTAGGGACATGACCACCCGTCGATCTCTTGGTTATGGCTATGTTAACTATAACAATCCTCAAGATGCGGCCCGGGCATTGGAGGAATTAAATTTTACTCCATTAAATGGCGGGCCCATTAGAATTATGTATTCTCATCGTGACCCAAGTGTCCGCAAGAGTGGTGCTGCAAATATATTTATAAAGAATCTGGACAAGGCTATTGACCAGAAAGCTTTGCATGATACATTTTCCTCCTTTGGAAGTATTCTTTCTTGCAAGATAGCTACTGATACTTCTGGCTTTTCCAAAGGCTATGGTTTTGTTCAATTTGAAAATGAAGAGTCTGCCCAAAATGCAATTGACAAGTTAAATGGCATGCTGATTAATGACAAGCAGGTTTATGTTGGACACTTTCTTCGGAAACAAGAAAGAGAAAGTAGTTCAGATAAGGCAAAATTTAATAACGTTTACGTAAAGAATTTGTCAGAATCAACTACGGATGAAGATTTGAAGAATATTTTTGGTTCATATGGAGCTATCACCAGTGCTGTGGTGATGAAAGATGGAGATGGAAAGTCAAGATGTTTTGGTTTTGTCAATTTTGAAAGTGCTGATGATGCTGTCAAAGCTGTTGATGAACTGAATGGGAAGACGTTTGATGACAAGGAATGGTATGTTGGAAAAGCTCAGAAAAAATCAGAAAGAGAAGTTGAGCTTAAGGGTCGATTTGAGCAAACTGTGAAGGAAACATATGATAGAAATCAAGGTGTAAACTTGTATGTCAAGAACTTGGATGATAGTATTGATGATGAAAAGCTTAGAGAATTGTTCTCGGAGTTCGGTTCAATTACTTCATGCAAGGTTATGTGTGATCCAAATGGAGTCAGTAGAGGTTCTGGATTTGTTGCGTTCGCGACTCAAGAGGAAGCATCTCGTGCTCTTGCTGAGATGAATGGTAAAATGATCGTCAGTAAACCTCTCTATGTAGCTCTGGCTCAACGAAAAGAAGAGAGAAGGGCGAGGTTGCAGGCACAATTTTCTCAAATGAGGCCTGTGGCAATGGCACCAGCAGTTGCTCCTCGTTTACCCATGTTCCATCCAGGTGCTGTGGGTCTTGGTCAACAGTTTTTATATGGACAAGCACCTCCTGCTTTAGTTCCTCAAGCAGGATTTGGTTACCAGCAGCAACTTGTTCCAGGAATGAGGCCTGGAGGAGTTCCTATGCCAAACTTCTTTGTTCCCATGGTCCAGCAGGGTCAGATTGGTCAACGGCCGGGAGGTCGGCGAGGATCAGGTCCTCTGCAACAAACTCAGCAACCTGTACCACTGATGCAGCCTCAGATGCTTCCAAGAGGACGAATATATCGTTATCCTCCTGGTCGTAACATGCCTGATGGACTGATGCCTGGTGTTGCTGGAGGTTTGCCTTCGTCTCCTTATGAGTTGGGTGGCATGCCTATGCGAGACCCATCTCTTGGACAATCTGCTCCTGTACCCGCTATGGCTACTGCCCTTGCCAATGCTTCTCCAGAGCAGCAAAGGATGATGCTTGGGGAAGCGTTGTATCCCCTGGTGGATCAGTTGGAGCATGAATCAGCTGCTAAGGTAACTGGGATGCTCCTGGAGATGGACCAGACTGAGGTGTTGCACCTGCTGGAGTCTCCAGAGGCTTTGAGGGCAAAAGTTGCAGAGGCCATGGAGGTTCTTAGGAGTGTTGCCCAACAGCAGGGGAACGCTGCAGTCGATCAACTTTCCTCCCTCTCTCTTAGTGATGATCTTGTAGGTTAA 1971 45.66 MAQIQVQHQTPMAGAGANGVAVAAGGSPGGSPFVPTSLYVGDLDVNVTDSQLYDLFNQMGQVLSVRVCRDMTTRRSLGYGYVNYNNPQDAARALEELNFTPLNGGPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDQKALHDTFSSFGSILSCKIATDTSGFSKGYGFVQFENEESAQNAIDKLNGMLINDKQVYVGHFLRKQERESSSDKAKFNNVYVKNLSESTTDEDLKNIFGSYGAITSAVVMKDGDGKSRCFGFVNFESADDAVKAVDELNGKTFDDKEWYVGKAQKKSEREVELKGRFEQTVKETYDRNQGVNLYVKNLDDSIDDEKLRELFSEFGSITSCKVMCDPNGVSRGSGFVAFATQEEASRALAEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPAVAPRLPMFHPGAVGLGQQFLYGQAPPALVPQAGFGYQQQLVPGMRPGGVPMPNFFVPMVQQGQIGQRPGGRRGSGPLQQTQQPVPLMQPQMLPRGRIYRYPPGRNMPDGLMPGVAGGLPSSPYELGGMPMRDPSLGQSAPVPAMATALANASPEQQRMMLGEALYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALRAKVAEAMEVLRSVAQQQGNAAVDQLSSLSLSDDLVG 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51929890 51934911 - Bda003880.1 Bda01g01608 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01608 656 Gene3D - 32 115 IPR012677 -
Bda01g01608 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Bda01g01608 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Bda01g01608 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Bda01g01608 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Bda01g01608 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Bda01g01608 656 SUPERFAMILY RNA-binding domain, RBD 215 399 IPR035979 GO:0003676
Bda01g01608 656 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 37 631 IPR006515 GO:0003723
Bda01g01608 656 SUPERFAMILY RNA-binding domain, RBD 36 205 IPR035979 GO:0003676
Bda01g01608 656 CDD RRM3_I_PABPs 214 293 - -
Bda01g01608 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Bda01g01608 656 SMART poly_2 570 633 IPR002004 GO:0003723
Bda01g01608 656 Gene3D - 116 204 IPR012677 -
Bda01g01608 656 SUPERFAMILY PABC (PABP) domain 499 643 IPR036053 GO:0003723
Bda01g01608 656 CDD RRM4_I_PABPs 317 395 - -
Bda01g01608 656 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Bda01g01608 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 201 IPR000504 GO:0003723
Bda01g01608 656 CDD RRM2_I_PABPs 122 198 IPR045305 -
Bda01g01608 656 SMART rrm1_1 125 197 IPR000504 GO:0003723
Bda01g01608 656 SMART rrm1_1 37 110 IPR000504 GO:0003723
Bda01g01608 656 SMART rrm1_1 319 391 IPR000504 GO:0003723
Bda01g01608 656 SMART rrm1_1 216 288 IPR000504 GO:0003723
Bda01g01608 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Bda01g01608 656 PANTHER POLYADENYLATE-BINDING PROTEIN 25 640 - -
Bda01g01608 656 CDD RRM1_I_PABPs 37 116 - -
Bda01g01608 656 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Bda01g01608 656 PANTHER RNA BINDING PROTEIN 25 640 - -
Bda01g01608 656 Gene3D - 554 637 - -
Bda01g01608 656 Gene3D - 205 304 IPR012677 -
Bda01g01608 656 Gene3D - 305 408 IPR012677 -
Bda01g01608 656 SMART rrm2_1 37 110 IPR003954 GO:0003676
Bda01g01608 656 SMART rrm2_1 125 197 IPR003954 GO:0003676
Bda01g01608 656 SMART rrm2_1 319 391 IPR003954 GO:0003676
Bda01g01608 656 SMART rrm2_1 216 288 IPR003954 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01608 Bda-Chr1:51929890 Bda15g00040 Bda-Chr15:1849466 0 dispersed
Bda07g00874 Bda-Chr7:10204933 Bda01g01608 Bda-Chr1:51929890 1.97E-09 dispersed
Bda15g00218 Bda-Chr15:4911964 Bda01g01608 Bda-Chr1:51929890 1.85E-08 dispersed
Bda02g00698 Bda-Chr2:47856770 Bda01g01608 Bda-Chr1:51929890 6.56E-13 transposed
Bda08g01368 Bda-Chr8:54274549 Bda01g01608 Bda-Chr1:51929890 0 transposed
Bda11g00858 Bda-Chr11:8470077 Bda01g01608 Bda-Chr1:51929890 0 transposed
Bda01g00562 Bda-Chr1:32626186 Bda01g01608 Bda-Chr1:51929890 2.77E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01608 K13126 - csin:114281995 991.875