Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01609 ATGAAGGTTCACCAATTTGCATGCGGATTCTGGGACCTCGAGCTATCCTCCCTCTCCCATGGCTCCAAGCGTCTCCGTCCTCTCGCTCCCAACCTTCAAAACAACACTGATAGCGCCATCTCCACCTTTGATCTCAAGAACTACATCAGACCCGATTCCGGCCCTAGATTAAAGCCTTCCTTTTCCTTCTCTTCCGACGACAAGAGAGATTCACCTCAAGTGGAGACGCATCCTGGAGGGACAAGGTGGAACCCAACTCAAGAGCAGATAGGGATATTGGAGATGCTTTACAGAGGAGGAATGAGAACTCCTAATGCACAGGAAATAGAACAAATCACAAAACAGCTTTGTAATTATGGGAAAATAGAAGGAAAAAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGAGAAAGGCAGAAACAGAAGCGAAACAGTCATGGTGTTTGCCATAGCCCAAGAACATCGGTAGCTGACTCTAGGATAGAAGGAGCAGATCGTAAAAGAGAAGAAGATAGTTCGTTCAAGAGAAAGTGCAGAAGCTGGGTATTTGAATGCTTGGGGGAAGAGATCATCCATGTAAGTAATGGAGAAGATCCAGGAGACAGAACTTTGGAGTTGTTTCCATTGCACCCAGAAGGTAGGTGA 648 45.52 MKVHQFACGFWDLELSSLSHGSKRLRPLAPNLQNNTDSAISTFDLKNYIRPDSGPRLKPSFSFSSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQEIEQITKQLCNYGKIEGKNVFYWFQNHKARERQKQKRNSHGVCHSPRTSVADSRIEGADRKREEDSSFKRKCRSWVFECLGEEIIHVSNGEDPGDRTLELFPLHPEGR 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51961173 51962013 - Bda032960 Bda01g01609 1609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01609 215 SUPERFAMILY Homeodomain-like 76 146 IPR009057 -
Bda01g01609 215 MobiDBLite consensus disorder prediction 52 85 - -
Bda01g01609 215 Gene3D - 80 147 - -
Bda01g01609 215 SMART HOX_1 78 145 IPR001356 GO:0003677
Bda01g01609 215 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Bda01g01609 215 CDD homeodomain 81 142 IPR001356 GO:0003677
Bda01g01609 215 Pfam Homeodomain 81 140 IPR001356 GO:0003677
Bda01g01609 215 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 215 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Bda01g01609 215 MobiDBLite consensus disorder prediction 139 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01609 - - - cit:102627740 292.737
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01609 Bda-Chr1:51961173 Bda08g01367 Bda-Chr8:54271883 1.63E-92 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda08g01367 BCT,CCT,ECH 71 217 Wox Gene Family AT1G46480 66.0 1.4e-49 193.0
Bda01g01609 . 1 146 Wox Gene Family AT1G46480 64.6 3.3e-48 188.3
Bda11g00976 CCT 1 216 Wox Gene Family AT4G35550 54.5 2.0e-59 226.1
Bda11g01811 . 1 176 Wox Gene Family AT4G35550 61.9 1.7e-53 206.5
Bda03g00324 CCT 30 178 Wox Gene Family AT4G35550 67.8 2.9e-53 205.7
Bda11g00976 CCT 32 170 Wox Gene Family AT1G20700 57.2 8.8e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15464 PF00046 Homeodomain 4.30E-19 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01609 Bda_Chr01 FPKM 42.399609 46.12196 34.541004 32.500942 16.867208 16.662783 16.783783 65.977615 66.558304