Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g01609 | ATGAAGGTTCACCAATTTGCATGCGGATTCTGGGACCTCGAGCTATCCTCCCTCTCCCATGGCTCCAAGCGTCTCCGTCCTCTCGCTCCCAACCTTCAAAACAACACTGATAGCGCCATCTCCACCTTTGATCTCAAGAACTACATCAGACCCGATTCCGGCCCTAGATTAAAGCCTTCCTTTTCCTTCTCTTCCGACGACAAGAGAGATTCACCTCAAGTGGAGACGCATCCTGGAGGGACAAGGTGGAACCCAACTCAAGAGCAGATAGGGATATTGGAGATGCTTTACAGAGGAGGAATGAGAACTCCTAATGCACAGGAAATAGAACAAATCACAAAACAGCTTTGTAATTATGGGAAAATAGAAGGAAAAAATGTGTTTTATTGGTTTCAAAACCACAAAGCTCGAGAAAGGCAGAAACAGAAGCGAAACAGTCATGGTGTTTGCCATAGCCCAAGAACATCGGTAGCTGACTCTAGGATAGAAGGAGCAGATCGTAAAAGAGAAGAAGATAGTTCGTTCAAGAGAAAGTGCAGAAGCTGGGTATTTGAATGCTTGGGGGAAGAGATCATCCATGTAAGTAATGGAGAAGATCCAGGAGACAGAACTTTGGAGTTGTTTCCATTGCACCCAGAAGGTAGGTGA | 648 | 45.52 | MKVHQFACGFWDLELSSLSHGSKRLRPLAPNLQNNTDSAISTFDLKNYIRPDSGPRLKPSFSFSSDDKRDSPQVETHPGGTRWNPTQEQIGILEMLYRGGMRTPNAQEIEQITKQLCNYGKIEGKNVFYWFQNHKARERQKQKRNSHGVCHSPRTSVADSRIEGADRKREEDSSFKRKCRSWVFECLGEEIIHVSNGEDPGDRTLELFPLHPEGR | 215 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 51961173 | 51962013 | - | Bda032960 | Bda01g01609 | 1609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g01609 | 215 | SUPERFAMILY | Homeodomain-like | 76 | 146 | IPR009057 | - | |
| Bda01g01609 | 215 | MobiDBLite | consensus disorder prediction | 52 | 85 | - | - | |
| Bda01g01609 | 215 | Gene3D | - | 80 | 147 | - | - | |
| Bda01g01609 | 215 | SMART | HOX_1 | 78 | 145 | IPR001356 | GO:0003677 | |
| Bda01g01609 | 215 | ProSiteProfiles | 'Homeobox' domain profile. | 76 | 141 | IPR001356 | GO:0003677 | |
| Bda01g01609 | 215 | CDD | homeodomain | 81 | 142 | IPR001356 | GO:0003677 | |
| Bda01g01609 | 215 | Pfam | Homeodomain | 81 | 140 | IPR001356 | GO:0003677 | |
| Bda01g01609 | 215 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 1 | 215 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 | |
| Bda01g01609 | 215 | MobiDBLite | consensus disorder prediction | 139 | 170 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01609 | Bda-Chr1:51961173 | Bda08g01367 | Bda-Chr8:54271883 | 1.63E-92 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15464 | PF00046 | Homeodomain | 4.30E-19 | CL0123 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g01609 | - | - | cit:102627740 | 292.737 |