Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01616 ATGGGCATCAAGGGTTTAACGAAGCTCTTGGCTGATAATGCTCCCAAAGCTATGAAGGAGCAGAAGTTCGAGAGTTACTTCGGTCGGAAGATTGCTATCGATGCCAGCATGAGCATCTATCAGTTCCTTATTGTTGTTGGAAGAAGTGGGACTGAGATGCTAACCAACGAGGCCGGGGAAGTAACTAGTCATTTGCAAGGCATGTTTTCTCGAACAATTAGGCTTCTTGAAGCTGGAATGAAGCCAGTCTATGTTTTTGATGGGGCGCCTCCTGACTTGAAAAAACAAGAGCTCGCGAAGCGTTTCTCCAAAAGGGCAGATGCCACTGAGGATTTAGCAGCTGCGGTGGAGGTTGGAAATAAAGAGGACATTGAAAAATTCAGCAAAAGGACAGTGAAGGTGACCAAACAACACAATGAAGACTGCAAAAAACTCTTAAGGCTCATGGGAGTACCTGTGATAGAGGCTCCATCAGAAGCAGAGGCACAATGCTCTGCACTTTGCAAATTAGGAAAGGTATATGCAGTGGCTTCTGAAGACATGGATTCACTAACATTTGGAGCTCCTAAATTTCTTCGTCATTTGATGGATCCTAGCTCAAGAAAAACCCCTGTCATGGAATTTGATGTAACAAAGGTTTTGGAGGAGCTAAACCTAACTATGGATCAATTCATCGATCTGTGCATTCTTTGTGGATGTGATTATTGTGACAGCATTCGAGGGATAGGGGGACAGACTGCTCTGAAGCTCATTCGCCAGCATGGCTCTATTGAAAATATATTAGAGAACATAAACAAAGAGAGATACCAAATACCTGATGATTGGCCATATCAAGAGGCTCGACGTCTTTTTAAAGAACCTGTTGTGGTAAAGGATGAAGAGCATATTGACGTTAAGTGGATTGCACCTGATGAAGAGGGTTTGGTAACTTTTTTGGTGAATGAAAATGGGTTCAACAATGAAAGAGTGGTAAAGGCAATAGAAAAAATTAAAGCAGCCAAGGACAAGTCATCACAGGGCCGTTTGGAATCATTTTTTAAGCCAGTAGCAAACTCTGCTCTGCCCACCAAGCGGAAGGAAACATCTGAAAAACCAAGTGCAAAAGCTACCAACAAAAAGTCCAAGTCTAGTCGAGGCAGAAAGTAG 1146 43.02 MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGAPPDLKKQELAKRFSKRADATEDLAAAVEVGNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCSALCKLGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKTPVMEFDVTKVLEELNLTMDQFIDLCILCGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPDDWPYQEARRLFKEPVVVKDEEHIDVKWIAPDEEGLVTFLVNENGFNNERVVKAIEKIKAAKDKSSQGRLESFFKPVANSALPTKRKETSEKPSAKATNKKSKSSRGRK 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52077763 52082886 + Bda003888.1 Bda01g01616 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01616 381 PANTHER FLAP ENDONUCLEASE 1 1 376 - -
Bda01g01616 381 CDD H3TH_FEN1-Euk 222 291 - -
Bda01g01616 381 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 376 IPR006084 -
Bda01g01616 381 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Bda01g01616 381 Gene3D - 10 222 - -
Bda01g01616 381 Gene3D - 223 286 - -
Bda01g01616 381 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Bda01g01616 381 SMART xpgn3 1 108 IPR006085 GO:0004518
Bda01g01616 381 MobiDBLite consensus disorder prediction 335 381 - -
Bda01g01616 381 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Bda01g01616 381 CDD PIN_FEN1 4 332 - -
Bda01g01616 381 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Bda01g01616 381 SMART 53exo3 29 306 IPR002421 GO:0003677
Bda01g01616 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Bda01g01616 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Bda01g01616 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Bda01g01616 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Bda01g01616 381 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Bda01g01616 381 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Bda01g01616 381 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Bda01g01616 381 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 351 IPR036279 -
Bda01g01616 381 SMART xpgineu 147 219 IPR006086 GO:0004518
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01616 Bda-Chr1:52077763 Bda07g00953 Bda-Chr7:11055104 2.80E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01616 K04799 - vvi:100242559 669.463