Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01624 ATGGCACCCACTGAGGACGACTGTCGGTTTTCTCAGCTTGTATTAGCATGTTCGGATTTGAAGAACATCCTCAAAGCATCAGCCAAATTGGAGGAACCTTTGCAGTCTCAGGCCATGGCAAACAAAGCACTCGATACCCGAATCAACCGAGCAGTGTCTCCCGCTCTCGCACTTCTCGATGACTTTAAGCTATTAGAATCAGTCCAATGTGAGATCCTTCAACTTTCGTCGCAATTGTCGGCTGAGAAATCGCCGCAGAAAAGGCTCAAGAAGCTCATCAGTTATGTGGATTGTGTTGAGAAGCTCAATGCAGCTGTAAATTCGATCGGCCAAGAGGGCGAGCCAGTGATTCAGAAGCTTCAAGAGGTCGTAGAGTTTCTGAGCAGAACGAAAGTTAGATACAGAAGAGCAGCTAAAGCACTAATGAGGCTAAATCCAGATTATCTAAAAACTTACACTCCTGAAGAAATCGACAAATTGGAGTGGGAGAATTTGGAGTCTGCAATTACTCTTTGGATAAAACACTTCGAACTTGCGGCCACAACGGTGATAGAATCTGAAAAGAAACTCTGCAACCAAGTTCTCGGAACAATCATGGACGGACTAGTATGGCCGGAATGTTTCACGAAGATATCGGACAAAATAATGGCAGTCTTCTTCCGGTTTGGAGAAGGCGTCGCAAGGAGCAGCAAAGAGCCGCAGAAGCTGTTCAAGCTTTTGGACATGTTCGATTCATTGGAAAAACTCAATCCTGAATTCGCTCAGATTTTCGAAGGAGATGCCGGAGCAGACATTTGTACTCGATTCAGAGAACTCCAAAAGCTTTTAATCCATGCTTCAACAAAAGTATTCTGGGAGTTCGGCCTCCAAATCGAAGGTGATTACGATGGTTTTCCTCCCCCAAAAGATGGATCGGTCCCAAAATTAGTAAGATATGCAGTCAATTACCTCAAGTTCTTAGCAAGCGAAAATTATAGCCTTTCATTTATGTCTACATATTTGCTTCCTTCAATGAAATTATTCGCCTTCAAGAATCTTAGTATTTCAGAAGACAATGATTTTGGAAAGGATGAAGAGGATGGAATGGACGTAATTTCAGGTCTCCATTGTAAAATTCTAGTTCAGTATGAAAAATACTTGGACTTTCATAATGCTCTGAAGGTGTTAAGTGGTCGATCATTGCAGAAGGAAGGATCACGTTTATGGGTCGACTATGAGGTTACCTGGGATAAAGATGGTCTTTTTCGATACTTGAGAAGTCAAACAGAGGAGAACGATAGTAGGATGCCAGGACTGGTAGCAGCAAAACAGATAAGTGAACCACCCAGAAGACCACAATATTCTCACTCCAGTCCAGATGATGCACGACGAAAGAGGTTCAGGGTTAGTGACATCAATTTAAAAAACCCAGACAACGAGATTATGATTCTGTATTTGTACATTGCCTTGAAATCACGATTCGTTGATATGTTTATGATTCTGAACCTTTTTTCTCCTGAAAATGAGCAAAGTACTTATGGTTGTACACAGGAATAG 1536 42.12 MAPTEDDCRFSQLVLACSDLKNILKASAKLEEPLQSQAMANKALDTRINRAVSPALALLDDFKLLESVQCEILQLSSQLSAEKSPQKRLKKLISYVDCVEKLNAAVNSIGQEGEPVIQKLQEVVEFLSRTKVRYRRAAKALMRLNPDYLKTYTPEEIDKLEWENLESAITLWIKHFELAATTVIESEKKLCNQVLGTIMDGLVWPECFTKISDKIMAVFFRFGEGVARSSKEPQKLFKLLDMFDSLEKLNPEFAQIFEGDAGADICTRFRELQKLLIHASTKVFWEFGLQIEGDYDGFPPPKDGSVPKLVRYAVNYLKFLASENYSLSFMSTYLLPSMKLFAFKNLSISEDNDFGKDEEDGMDVISGLHCKILVQYEKYLDFHNALKVLSGRSLQKEGSRLWVDYEVTWDKDGLFRYLRSQTEENDSRMPGLVAAKQISEPPRRPQYSHSSPDDARRKRFRVSDINLKNPDNEIMILYLYIALKSRFVDMFMILNLFSPENEQSTYGCTQE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52131909 52141042 + Bda003895.1 Bda01g01624 1624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01624 511 PANTHER EXOCYST COMPLEX PROTEIN EXO70 131 328 IPR004140 GO:0000145|GO:0006887
Bda01g01624 511 Gene3D Exocyst complex component Exo70 18 383 - -
Bda01g01624 511 SUPERFAMILY Cullin repeat-like 92 377 IPR016159 -
Bda01g01624 511 PANTHER OS08G0519900 PROTEIN 131 328 - -
Bda01g01624 511 Coils Coil 117 137 - -
Bda01g01624 511 MobiDBLite consensus disorder prediction 436 455 - -
Bda01g01624 511 Pfam Exo70 exocyst complex subunit 172 331 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bda01g01624 511 PANTHER OS08G0519900 PROTEIN 24 131 - -
Bda01g01624 511 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 131 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01624 - - - egr:104451118 340.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01624 Bda-Chr1:52131909 Bda03g00036 Bda-Chr3:501989 2.23E-27 dispersed
Bda01g01624 Bda-Chr1:52131909 Bda01g00338 Bda-Chr1:28985615 4.60E-24 transposed
Bda01g01624 Bda-Chr1:52131909 Bda01g00434 Bda-Chr1:31203404 4.56E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g645 . . . . . . . . . . . . . . Sed10g1171 . . Bhi04g00434 Tan02g1725 Cmetu03g0164 . . . . . . . . . . . Cone4ag1617 Cone7ag1331 . . . . . Cme03g02107 . . . Bda01g01624 . . . . . . . . Cma05g00135 Car05g00116 . Cpe11g00116 . . . . . . . . . . . . . . . . Csa02g01889 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011239 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01624 Bda_Chr01 FPKM 23.756374 23.322933 23.088793 23.426525 28.795763 25.958286 34.563381 19.243385 21.859926