Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01638 | ATGGCGACGAGGAATAGAACCTTGCTGTTTAAGAAATATAGAGATGCTTTAAAGAGCGTTAGAGTTCCGGCGAGTTCTTCCCTTGCGTCTGGTTCGCCGTCGACTTCTGGCGGTGGCGGAGGTGGTCCGGTTATCGAATTGGTCAGCACCTCGCTTTTGCATCCGAATCGATCTTATGCTCCGCTAAGTACTGAGGATCCGGGTTATTCAAGTAAGGGTGCTCTTACTGTTGGTCTACCTCCAGCTTGGGTGGATGTTTCTGAAGAAATATCAACAAATGTGCAGCGTGCACAAATAAAAATGGCTGAGTTAGCCAAGGCACATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAAAGATTAATTGAAGCTCTTACTCAAGAGATTACAGGTCTGATTAAGAAATCAGAGAAGAGACTACAAAGACTTTCTGTAGCAGGACCTTCTGAAGATTCCAATGTCAGAAAAAATGTTCAGCGTTCTCTTGCCACAGACCTTCAAAATCTTTCAATGGAGCTTCGCAAAAAACAATCAACTTACCTCAAGCGGCTCAGGCAGCAAAAGGAGGGTCAAGATGGGATAGACTTAGAGATGAATCTAAATGGAAGTAGATCTACTGCCGAGGATGATGACTTGGATAACATGATATTTAATGAGCATCAGATGGCCAAGCTTAAAAAGAGCGAAGCATTCACAGCAGAAAGAGAGAGAGAAATCCAACAGGCAAGGGAAATAACTTTATTTACTGCTTTATTAGTTGTAGAATCTGTAAATGAGCTTGCTCAGATTATGAAGGATCTTTCAGTTCTTGTTATAGACCAGCAGGGCACAATTGTTGATAGGATTGATTACAACATTCAGAATGTGGCAACAACAGTTGAGGAGGGCCTTAAACAGCTGCAGAAGGCTGAAAGAACACAGAAACAAGGAGGGATGGTTATGTGCGCATCTGTGCTTCTTATCATGTGCTTCATTATGTTGGTTCTCCTGGTTCTCAAGGAAATATTTTTG | 1023 | 42.33 | MATRNRTLLFKKYRDALKSVRVPASSSLASGSPSTSGGGGGGPVIELVSTSLLHPNRSYAPLSTEDPGYSSKGALTVGLPPAWVDVSEEISTNVQRAQIKMAELAKAHAKALMPSFGDGKEDQRLIEALTQEITGLIKKSEKRLQRLSVAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGIDLEMNLNGSRSTAEDDDLDNMIFNEHQMAKLKKSEAFTAEREREIQQAREITLFTALLVVESVNELAQIMKDLSVLVIDQQGTIVDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLLIMCFIMLVLLVLKEIFL | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 52304232 | 52307741 | + | Bda032965 | Bda01g01638 | 1638 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01638 | 341 | SMART | SynN_4 | 74 | 189 | IPR006011 | GO:0016020 | |
Bda01g01638 | 341 | PANTHER | SYNTAXIN-43-LIKE | 1 | 336 | - | - | |
Bda01g01638 | 341 | MobiDBLite | consensus disorder prediction | 24 | 46 | - | - | |
Bda01g01638 | 341 | Gene3D | - | 80 | 299 | - | - | |
Bda01g01638 | 341 | PANTHER | SYNTAXIN | 1 | 336 | IPR045242 | - | |
Bda01g01638 | 341 | CDD | SNARE_syntaxin16 | 237 | 306 | - | - | |
Bda01g01638 | 341 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 276 | 307 | IPR000727 | - | |
Bda01g01638 | 341 | SUPERFAMILY | t-snare proteins | 79 | 300 | IPR010989 | GO:0016020|GO:0016192 | |
Bda01g01638 | 341 | Pfam | SNARE domain | 281 | 333 | IPR000727 | - | |
Bda01g01638 | 341 | SMART | tSNARE_6 | 240 | 307 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01638 | Bda-Chr1:52304232 | Bda08g01094 | Bda-Chr8:24288912 | 1.40E-165 | dispersed | |
Bda01g01638 | Bda-Chr1:52304232 | Bda01g01644 | Bda-Chr1:52440821 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01638 | K08489 | - | jre:109011309 | 529.25 |