Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01644 ATGGCGACGAGGAATAGAACCTTGCTGTTTAAGAAATATAGAGATGCTTTAAAGAGCGTTAGAGTTCCGGCGAGTTCTTCCCTTGCGTCTGGTTCGCCGTCGACTTCTGGCGGTGGCGGAGGTGGTCCGGTTATCGAATTGGTCAGCACCTCGCTTTTGCATCCGAATCGATCTTATGCTCCGCTAAGTACTGAGGATCCGGGTTATTCAAGTAAGGGTGCTCTTACTGTTGGTCTACCTCCAGCTTGGGTGGATGTTTCTGAAGAAATATCAACAAATGTGCAGCGTGCACAAATAAAAATGGCTGAGTTAGCCAAGGCACATGCAAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAAGATCAAAGATTAATTGAAGCTCTTACTCAAGAGATTACAGGTCTGATTAAGAAATCAGAGAAGAGACTACAAAGACTTTCTGTAGCAGGACCTTCTGAAGATTCCAATGTCAGAAAAAATGTTCAGCGTTCTCTTGCCACAGACCTTCAAAATCTTTCAATGGAGCTTCGCAAAAAACAATCAACTTACCTCAAGCGGCTCAGGCAGCAAAAGGAGGGTCAAGATGGGATAGACTTAGAGATGAATCTAAATGGAAGTAGATCTACTGCCGAGGATGATGACTTGGATAACATGATATTTAATGAGCATCAGATGGCCAAGCTTAAAAAGAGCGAAGCATTCACAGCAGAAAGAGAGAGAGAAATCCAACAGGCAAGGGAAATAACTTTATTTACTGCTTTATTAGTTGTAGAATCTGTAAATGAGCTTGCTCAGATTATGAAGGATCTTTCAGTTCTTGTTATAGACCAGCAGGGCACAATTGTTGATAGGATTGATTACAACATTCAGAATGTGGCAACAACAGTTGAGGAGGGCCTTAAACAGCTGCAGAAGGCTGAAAGAACACAGAAACAAGGAGGGATGGTTATGTGCGCATCTGTGCTTCTTATCATGTGCTTCATTATGTTGGTTCTCCTGGTTCTCAAGGAAATATTTTTGTGA 1026 42.3 MATRNRTLLFKKYRDALKSVRVPASSSLASGSPSTSGGGGGGPVIELVSTSLLHPNRSYAPLSTEDPGYSSKGALTVGLPPAWVDVSEEISTNVQRAQIKMAELAKAHAKALMPSFGDGKEDQRLIEALTQEITGLIKKSEKRLQRLSVAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGIDLEMNLNGSRSTAEDDDLDNMIFNEHQMAKLKKSEAFTAEREREIQQAREITLFTALLVVESVNELAQIMKDLSVLVIDQQGTIVDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLLIMCFIMLVLLVLKEIFL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52440821 52444331 + Bda003913.1 Bda01g01644 1644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01644 341 SMART SynN_4 74 189 IPR006011 GO:0016020
Bda01g01644 341 PANTHER SYNTAXIN-43-LIKE 1 336 - -
Bda01g01644 341 MobiDBLite consensus disorder prediction 24 46 - -
Bda01g01644 341 Gene3D - 80 299 - -
Bda01g01644 341 PANTHER SYNTAXIN 1 336 IPR045242 -
Bda01g01644 341 CDD SNARE_syntaxin16 237 306 - -
Bda01g01644 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 276 307 IPR000727 -
Bda01g01644 341 SUPERFAMILY t-snare proteins 79 300 IPR010989 GO:0016020|GO:0016192
Bda01g01644 341 Pfam SNARE domain 281 333 IPR000727 -
Bda01g01644 341 SMART tSNARE_6 240 307 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01638 Bda-Chr1:52304232 Bda01g01644 Bda-Chr1:52440821 0 proximal
Bda01g01644 Bda-Chr1:52440821 Bda08g01094 Bda-Chr8:24288912 1.40E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01644 K08489 - jre:109011309 529.25