Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01665 GAAATGTCTTCTTCAAGACCCAGTCAATCATCAAGCAACTCAGGTCGATCAAGACACGGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAAGAATCCAGTAGTTCTTTCGACTACTCAAGTTCAGTGCGGCTTACCAATGCTTTTGGTGAAGATCAACGGCCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCATATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCATACAGTGAAAATGCCACAGAAATGCTAACTATGGTGAGTCATGCAGTCCCAAGTGTTGGTGATCATCCAGTTCTTGGCATTGGAATTGATTTTAGGTCCATTTTTACTGCCCCAAGCGCCTCAGCCTTGCAGAAGGTTCTTGGTTTTGGAGAGGTTACACTTCTGAATCCTGTATTAGTTCATTGTAAGTCATCTGGGAGGCCCTTCTATGCAATTGTTCACCGTGTTACTGGCAGCTTGATCATTGATTTTGAACCAGTGAAGCCTTATGAAATACCAATGACTGCAGCTGGGGCCCTACAATCTTACAGGCTTGCAGCAAAAGCAATTAACAGATTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGACTTTGTGATACAATGGTTCAAGAAGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCACGATGATGACCATGGGGAAGTGGTCTCTGAAGTCACAAAGCCTGGGTTGGAGCCATATCTGGGGTTGCACTATCCAGCTACTGATATCCCTCAAGCAGCACGGTTTTTATTCATGAAGAATAAGGTCCGAATTATTGTTGATTGTCGTGCAAAACCTGTGAAAGTGCTCCAGGACGAGAAACTTTCCTTTGATCTAACTCTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATCGCTTCTCTGACTATGGCTGTTGTGGTCAACGAGGAAGATGACGAGAATGACAATCCCAATCCCGTGCTGCCACAAAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATAACACAACCCCCAGGTTTGTACCATTCCCTGTAAGATATGCATGTGAATTTCTCGCTCAAGTATTTGGCATCCATGTCAATAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTCTTGTGCGACATGTTAATGCGGGACGCACCTTTAGGCATTGTAACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCATGATATACAAAAATCAGGTATGGAGATTGGGAATAACTCCTAGTGAATTCCATCTCCAAGAAATTGCTGCGTGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGTTTGTACGATGCGGGTTTCCCAGGGGCTCTCGCTCTTGGTGGAGTCTGTGGAATGGCGACAGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTTCGTAACCATGCTGTCGCGGAAATTCGATGGGGCGGGGCAAAGCATGAAGCTGGTGAAGAGGACGACAGTAGGAAGATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCCTGGAAGGACTACGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTAAAAGATATGCAAATGGTTGATACGAACAGCAAATCAATTCATGCAAAACTCAGCACCCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGTGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGCAGAGGGGCTAGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGAGAAAGCGATCGGAAAGCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTGGATATAGTCAAGAATATGTTGTACCTAGCGTTCCAAGGACAAGAGGAGAAACACGTAGAATTTGAGATCAGAACTCACGGGCCTAGTATCGATGCAGGTCCCATTAGCTTAGTTGTCAACGCTTGTGCAAGCAGGGATTTGGAAGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGCTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGATTACAAAGCAATTGTGCAAAACCCAAATCCACTAATCCCCCCTATATTTGGCATGGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCAATGATAAAGTTAAGTGGGTGGAATCGGGATGATGTTGTTGATAAAATACTTTTGGGAGAGGTCTTTGGGACCCAAATGGCCTGCTGTCGAGTCAAGAATCAAGAATTGTGCGTAAATCTTGGTGTAGTCCTTAATAATGCTATGAGTGGCCAAAATCCTGAAAAGATTTCTTTTGGTTTCTATGATCGGAAAGGTAAATATGTAGAATGTCTGTTGTGTGTGAGTAAGAAAACAGACAGAGATGGTGCAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTACAGAAAGCACTCCATGTGCAGCACTTAGCCGAGAAAACTGCCGTAAAGAGATCCAAAGCATTAGCGTATATAAAAAGGCAGATAGGAAGTTCTTTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAAACAAGCACGCAGTGCCAGCGGCAGCTCAGCAAGGTTCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTTCTCTACATGAAGTATTGGCTGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAGGGTGTTTTCATACTAAATGAGACTGCTAAAGAGATCCAGAATGAAGCTCTATATGGTGATAATGCGAGGCTTCAGCAAGTGTTGGCTGATTTCTTACTAATATCAGTCAGTTTTTCTCCAGTAGGCAGCGAGATTATTATTTCGGCCAGTCTAACAAAAGATCAATTAGGTCAATCCATAGATCTAGCACATCTGAAGTTTAGAATAGCGCAAGCAGGTGGTGGACTACCAGCAGCACTGCTAAACGAATTGTTTGAAAACAATGAAGACAGGTCTGAAGAAGGGGTCAGCTTGCTTGTTAGCAGAAAGCTGGTGAAGCTCATGAATGGAGATGTGCAGTATCTGAGAGAAGCAGGCAAGTCTACATTCATCATATCTGTCGAGCTCGCGGCAGGCCACATGCCAATTTAG 3372 43.06 EMSSSRPSQSSSNSGRSRHGARIIAQTTVDAKLHANYEESSSSFDYSSSVRLTNAFGEDQRPKSDKVTTAYLHHIQKGKHIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGDHPVLGIGIDFRSIFTAPSASALQKVLGFGEVTLLNPVLVHCKSSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMTAAGALQSYRLAAKAINRLQSLPSGSMERLCDTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCRAKPVKVLQDEKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLTMAVVVNEEDDENDNPNPVLPQKRKRLWGLVVCHNTTPRFVPFPVRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMIYKNQVWRLGITPSEFHLQEIAAWLSEHHMDSTGLSTDSLYDAGFPGALALGGVCGMATVRITSKDMICWFRNHAVAEIRWGGAKHEAGEEDDSRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDMQMVDTNSKSIHAKLSTLKIGGMQELEAVTGEIVRLIETAMVPILAVDAEGLVNGWNMKIAELTGLPVEKAIGKHFLSLVEDSSVDIVKNMLYLAFQGQEEKHVEFEIRTHGPSIDAGPISLVVNACASRDLEENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGMDEFGWCTEWNPAMIKLSGWNRDDVVDKILLGEVFGTQMACCRVKNQELCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYVECLLCVSKKTDRDGAVTGIFCFLQLPSLELQKALHVQHLAEKTAVKRSKALAYIKRQIGSSLSGIIYSSEMLEGTALEVEQKHLLQTSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFSLHEVLAASISQVMMKSREKGVFILNETAKEIQNEALYGDNARLQQVLADFLLISVSFSPVGSEIIISASLTKDQLGQSIDLAHLKFRIAQAGGGLPAALLNELFENNEDRSEEGVSLLVSRKLVKLMNGDVQYLREAGKSTFIISVELAAGHMPI 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52770489 52774948 + Bda003940.1 Bda01g01665 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01665 1123 ProSiteProfiles Histidine kinase domain profile. 901 1118 IPR005467 -
Bda01g01665 1123 Coils Coil 399 419 - -
Bda01g01665 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Bda01g01665 1123 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Bda01g01665 1123 CDD PAS 761 872 IPR000014 -
Bda01g01665 1123 PIRSF Phytochrome_conventional 1 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bda01g01665 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Bda01g01665 1123 SUPERFAMILY GAF domain-like 198 399 - -
Bda01g01665 1123 Gene3D PAS domain 580 748 - -
Bda01g01665 1123 Gene3D PAS domain 763 873 - -
Bda01g01665 1123 MobiDBLite consensus disorder prediction 1 21 - -
Bda01g01665 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 1119 - -
Bda01g01665 1123 MobiDBLite consensus disorder prediction 1 22 - -
Bda01g01665 1123 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Bda01g01665 1123 SUPERFAMILY GAF domain-like 410 588 - -
Bda01g01665 1123 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 Gene3D - 200 562 IPR029016 -
Bda01g01665 1123 SMART pas_2 749 818 IPR000014 -
Bda01g01665 1123 SMART pas_2 619 685 IPR000014 -
Bda01g01665 1123 Pfam PAS fold 620 734 IPR013767 GO:0006355
Bda01g01665 1123 Pfam PAS fold 750 872 IPR013767 GO:0006355
Bda01g01665 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bda01g01665 1123 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
Bda01g01665 1123 CDD PAS 630 734 IPR000014 -
Bda01g01665 1123 Gene3D PAS domain 75 322 - -
Bda01g01665 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Bda01g01665 1123 Pfam Phytochrome region 415 588 IPR013515 GO:0006355|GO:0009584
Bda01g01665 1123 PANTHER PHYTOCHROME A 2 1119 - -
Bda01g01665 1123 SMART gaf_1 219 412 IPR003018 GO:0005515
Bda01g01665 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Bda01g01665 1123 Gene3D - 957 1119 IPR036890 -
Bda01g01665 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1112 IPR036890 -
Bda01g01665 1123 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bda01g01665 1123 Gene3D - 407 579 IPR043150 -
Bda01g01665 1123 Pfam GAF domain 219 402 IPR003018 GO:0005515
Bda01g01665 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
Bda01g01665 1123 SMART HKATPase_4 1006 1118 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01665 Bda-Chr1:52770489 Bda06g00414 Bda-Chr6:6278738 0 dispersed
Bda01g01665 Bda-Chr1:52770489 Bda11g00500 Bda-Chr11:5316805 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01665 K12120 - tcc:18600656 1784.62