Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01665 GAAATGTCTTCTTCAAGACCCAGTCAATCATCAAGCAACTCAGGTCGATCAAGACACGGTGCTAGAATAATTGCTCAGACTACTGTAGATGCAAAACTTCATGCAAATTATGAAGAATCCAGTAGTTCTTTCGACTACTCAAGTTCAGTGCGGCTTACCAATGCTTTTGGTGAAGATCAACGGCCCAAGTCTGACAAAGTCACAACAGCTTACCTCCATCACATACAAAAAGGCAAGCATATCCAGCCATTTGGCTGCTTGTTGGCTTTAGATGAGAAAACCTTCAAAGTCATTGCATACAGTGAAAATGCCACAGAAATGCTAACTATGGTGAGTCATGCAGTCCCAAGTGTTGGTGATCATCCAGTTCTTGGCATTGGAATTGATTTTAGGTCCATTTTTACTGCCCCAAGCGCCTCAGCCTTGCAGAAGGTTCTTGGTTTTGGAGAGGTTACACTTCTGAATCCTGTATTAGTTCATTGTAAGTCATCTGGGAGGCCCTTCTATGCAATTGTTCACCGTGTTACTGGCAGCTTGATCATTGATTTTGAACCAGTGAAGCCTTATGAAATACCAATGACTGCAGCTGGGGCCCTACAATCTTACAGGCTTGCAGCAAAAGCAATTAACAGATTGCAGTCTCTGCCCAGTGGGAGCATGGAAAGACTTTGTGATACAATGGTTCAAGAAGTTTATGAACTCACAGGCTATGACAGAGTGATGGTCTACAAATTTCACGATGATGACCATGGGGAAGTGGTCTCTGAAGTCACAAAGCCTGGGTTGGAGCCATATCTGGGGTTGCACTATCCAGCTACTGATATCCCTCAAGCAGCACGGTTTTTATTCATGAAGAATAAGGTCCGAATTATTGTTGATTGTCGTGCAAAACCTGTGAAAGTGCTCCAGGACGAGAAACTTTCCTTTGATCTAACTCTATGTGGTTCAACTTTAAGGGCCCCTCATAGTTGCCATTTGCAGTACATGGAGAACATGAATTCCATCGCTTCTCTGACTATGGCTGTTGTGGTCAACGAGGAAGATGACGAGAATGACAATCCCAATCCCGTGCTGCCACAAAAGAGAAAGAGATTATGGGGTTTAGTAGTTTGCCATAACACAACCCCCAGGTTTGTACCATTCCCTGTAAGATATGCATGTGAATTTCTCGCTCAAGTATTTGGCATCCATGTCAATAAAGAATTAGAGCTGGAAAATCAGATTGTTGAAAAAAACATTCTACGCACACAAACACTCTTGTGCGACATGTTAATGCGGGACGCACCTTTAGGCATTGTAACACAGAGCCCGAATATAATGGATCTTGTGAAATGTGATGGAGCTGCCATGATATACAAAAATCAGGTATGGAGATTGGGAATAACTCCTAGTGAATTCCATCTCCAAGAAATTGCTGCGTGGCTTTCTGAGCATCATATGGATTCGACTGGATTAAGCACAGATAGTTTGTACGATGCGGGTTTCCCAGGGGCTCTCGCTCTTGGTGGAGTCTGTGGAATGGCGACAGTTCGGATAACTTCCAAGGACATGATTTGTTGGTTTCGTAACCATGCTGTCGCGGAAATTCGATGGGGCGGGGCAAAGCATGAAGCTGGTGAAGAGGACGACAGTAGGAAGATGCATCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTTGAAAGGAGAAGTTTTCCCTGGAAGGACTACGAAATGGATGCAATCCATTCCCTGCAGCTTATATTGAGGAATGCACTAAAAGATATGCAAATGGTTGATACGAACAGCAAATCAATTCATGCAAAACTCAGCACCCTCAAGATTGGGGGGATGCAAGAACTAGAAGCAGTTACTGGTGAGATTGTCCGTTTGATTGAGACAGCCATGGTGCCTATTTTGGCTGTTGACGCAGAGGGGCTAGTTAATGGCTGGAATATGAAAATTGCTGAGTTAACTGGTCTTCCTGTTGAGAAAGCGATCGGAAAGCATTTTCTCTCTCTTGTGGAGGATTCTTCAGTGGATATAGTCAAGAATATGTTGTACCTAGCGTTCCAAGGACAAGAGGAGAAACACGTAGAATTTGAGATCAGAACTCACGGGCCTAGTATCGATGCAGGTCCCATTAGCTTAGTTGTCAACGCTTGTGCAAGCAGGGATTTGGAAGAAAATGTTGTTGGAGTGTGTTTTGTGGCTCAAGATATCACTGCTCAGAAGACAGTGATGGACAAGTTCACACGGATAGAAGGTGATTACAAAGCAATTGTGCAAAACCCAAATCCACTAATCCCCCCTATATTTGGCATGGATGAATTTGGCTGGTGCACAGAATGGAACCCAGCAATGATAAAGTTAAGTGGGTGGAATCGGGATGATGTTGTTGATAAAATACTTTTGGGAGAGGTCTTTGGGACCCAAATGGCCTGCTGTCGAGTCAAGAATCAAGAATTGTGCGTAAATCTTGGTGTAGTCCTTAATAATGCTATGAGTGGCCAAAATCCTGAAAAGATTTCTTTTGGTTTCTATGATCGGAAAGGTAAATATGTAGAATGTCTGTTGTGTGTGAGTAAGAAAACAGACAGAGATGGTGCAGTGACTGGAATTTTTTGCTTTTTGCAACTTCCTAGCTTAGAGTTACAGAAAGCACTCCATGTGCAGCACTTAGCCGAGAAAACTGCCGTAAAGAGATCCAAAGCATTAGCGTATATAAAAAGGCAGATAGGAAGTTCTTTATCTGGCATCATATATTCTAGTGAAATGTTGGAGGGTACTGCATTGGAAGTAGAACAGAAACATCTTCTGCAAACAAGCACGCAGTGCCAGCGGCAGCTCAGCAAGGTTCTTGATGACTCAGATCTTGATAGAATCTTTGATGGCTTTTTGGATCTTGAAATGGTTCAGTTTTCTCTACATGAAGTATTGGCTGCTTCGATCAGCCAAGTCATGATGAAGAGCAGAGAAAAGGGTGTTTTCATACTAAATGAGACTGCTAAAGAGATCCAGAATGAAGCTCTATATGGTGATAATGCGAGGCTTCAGCAAGTGTTGGCTGATTTCTTACTAATATCAGTCAGTTTTTCTCCAGTAGGCAGCGAGATTATTATTTCGGCCAGTCTAACAAAAGATCAATTAGGTCAATCCATAGATCTAGCACATCTGAAGTTTAGAATAGCGCAAGCAGGTGGTGGACTACCAGCAGCACTGCTAAACGAATTGTTTGAAAACAATGAAGACAGGTCTGAAGAAGGGGTCAGCTTGCTTGTTAGCAGAAAGCTGGTGAAGCTCATGAATGGAGATGTGCAGTATCTGAGAGAAGCAGGCAAGTCTACATTCATCATATCTGTCGAGCTCGCGGCAGGCCACATGCCAATTTAG 3372 43.06 EMSSSRPSQSSSNSGRSRHGARIIAQTTVDAKLHANYEESSSSFDYSSSVRLTNAFGEDQRPKSDKVTTAYLHHIQKGKHIQPFGCLLALDEKTFKVIAYSENATEMLTMVSHAVPSVGDHPVLGIGIDFRSIFTAPSASALQKVLGFGEVTLLNPVLVHCKSSGRPFYAIVHRVTGSLIIDFEPVKPYEIPMTAAGALQSYRLAAKAINRLQSLPSGSMERLCDTMVQEVYELTGYDRVMVYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRIIVDCRAKPVKVLQDEKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLTMAVVVNEEDDENDNPNPVLPQKRKRLWGLVVCHNTTPRFVPFPVRYACEFLAQVFGIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIMDLVKCDGAAMIYKNQVWRLGITPSEFHLQEIAAWLSEHHMDSTGLSTDSLYDAGFPGALALGGVCGMATVRITSKDMICWFRNHAVAEIRWGGAKHEAGEEDDSRKMHPRSSFKAFLEVVERRSFPWKDYEMDAIHSLQLILRNALKDMQMVDTNSKSIHAKLSTLKIGGMQELEAVTGEIVRLIETAMVPILAVDAEGLVNGWNMKIAELTGLPVEKAIGKHFLSLVEDSSVDIVKNMLYLAFQGQEEKHVEFEIRTHGPSIDAGPISLVVNACASRDLEENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGMDEFGWCTEWNPAMIKLSGWNRDDVVDKILLGEVFGTQMACCRVKNQELCVNLGVVLNNAMSGQNPEKISFGFYDRKGKYVECLLCVSKKTDRDGAVTGIFCFLQLPSLELQKALHVQHLAEKTAVKRSKALAYIKRQIGSSLSGIIYSSEMLEGTALEVEQKHLLQTSTQCQRQLSKVLDDSDLDRIFDGFLDLEMVQFSLHEVLAASISQVMMKSREKGVFILNETAKEIQNEALYGDNARLQQVLADFLLISVSFSPVGSEIIISASLTKDQLGQSIDLAHLKFRIAQAGGGLPAALLNELFENNEDRSEEGVSLLVSRKLVKLMNGDVQYLREAGKSTFIISVELAAGHMPI 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 52770489 52774948 + Bda003940.1 Bda01g01665 1665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01665 1123 ProSiteProfiles Histidine kinase domain profile. 901 1118 IPR005467 -
Bda01g01665 1123 Coils Coil 399 419 - -
Bda01g01665 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Bda01g01665 1123 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Bda01g01665 1123 CDD PAS 761 872 IPR000014 -
Bda01g01665 1123 PIRSF Phytochrome_conventional 1 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bda01g01665 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Bda01g01665 1123 SUPERFAMILY GAF domain-like 198 399 - -
Bda01g01665 1123 Gene3D PAS domain 580 748 - -
Bda01g01665 1123 Gene3D PAS domain 763 873 - -
Bda01g01665 1123 MobiDBLite consensus disorder prediction 1 21 - -
Bda01g01665 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 2 1119 - -
Bda01g01665 1123 MobiDBLite consensus disorder prediction 1 22 - -
Bda01g01665 1123 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Bda01g01665 1123 SUPERFAMILY GAF domain-like 410 588 - -
Bda01g01665 1123 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 432 452 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Bda01g01665 1123 Gene3D - 200 562 IPR029016 -
Bda01g01665 1123 SMART pas_2 749 818 IPR000014 -
Bda01g01665 1123 SMART pas_2 619 685 IPR000014 -
Bda01g01665 1123 Pfam PAS fold 620 734 IPR013767 GO:0006355
Bda01g01665 1123 Pfam PAS fold 750 872 IPR013767 GO:0006355
Bda01g01665 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Bda01g01665 1123 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
Bda01g01665 1123 CDD PAS 630 734 IPR000014 -
Bda01g01665 1123 Gene3D PAS domain 75 322 - -
Bda01g01665 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Bda01g01665 1123 Pfam Phytochrome region 415 588 IPR013515 GO:0006355|GO:0009584
Bda01g01665 1123 PANTHER PHYTOCHROME A 2 1119 - -
Bda01g01665 1123 SMART gaf_1 219 412 IPR003018 GO:0005515
Bda01g01665 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Bda01g01665 1123 Gene3D - 957 1119 IPR036890 -
Bda01g01665 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1112 IPR036890 -
Bda01g01665 1123 Pfam PAS fold 70 186 IPR013654 GO:0006355
Bda01g01665 1123 Gene3D - 407 579 IPR043150 -
Bda01g01665 1123 Pfam GAF domain 219 402 IPR003018 GO:0005515
Bda01g01665 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 392 IPR016132 -
Bda01g01665 1123 SMART HKATPase_4 1006 1118 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01665 K12120 PHYA; phytochrome A - tcc:18600656 1784.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01665 Bda-Chr1:52770489 Bda06g00414 Bda-Chr6:6278738 0 dispersed
Bda01g01665 Bda-Chr1:52770489 Bda11g00500 Bda-Chr11:5316805 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01830 . 533 1712 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1443.7
Bda14g00969 . 504 1648 Histidine Kinase Gene Family AT2G17820 64.8 0.0e+00 1357.0
Bda13g00598 . 305 1278 Histidine Kinase Gene Family AT2G01830 51.7 1.5e-270 929.5
Bda06g00425 . 197 1076 Histidine Kinase Gene Family AT2G01830 53.3 6.4e-250 860.9
Bda01g00649 . 1 1022 Histidine Kinase Gene Family AT5G10720 54.8 3.5e-284 974.5
Bda01g01665 . 2 1120 Histidine Kinase Gene Family AT1G09570 76.8 0.0e+00 1753.0
Bda06g00414 . 12 1121 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1250.7
Bda11g00500 CCT 29 1120 Histidine Kinase Gene Family AT1G09570 53.0 0.0e+00 1164.1
Bda01g00824 . 36 875 Histidine Kinase Gene Family AT1G09570 54.3 2.6e-265 912.1
Bda08g00333 CCT 1 680 Histidine Kinase Gene Family AT1G09570 52.1 6.9e-202 701.4
Bda11g00500 CCT 30 1061 Histidine Kinase Gene Family AT2G18790 76.6 0.0e+00 1604.0
Bda07g00948 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.5 0.0e+00 1223.8
Bda01g00824 . 15 877 Histidine Kinase Gene Family AT2G18790 66.0 0.0e+00 1152.9
Bda06g00414 . 23 1076 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1114.8
Bda01g01665 . 22 1055 Histidine Kinase Gene Family AT2G18790 51.0 1.0e-306 1049.7
Bda08g00333 CCT 1 616 Histidine Kinase Gene Family AT2G18790 73.8 3.0e-269 925.2
Bda06g00414 . 10 1119 Histidine Kinase Gene Family AT5G35840 62.6 0.0e+00 1400.6
Bda11g00500 CCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1123.6
Bda01g01665 . 10 1115 Histidine Kinase Gene Family AT5G35840 50.5 0.0e+00 1103.6
Bda01g00824 . 40 871 Histidine Kinase Gene Family AT5G35840 52.1 1.1e-255 880.2
Bda11g00500 CCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1639.0
Bda07g00948 . 36 1107 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1250.0
Bda06g00414 . 24 1118 Histidine Kinase Gene Family AT4G16250 52.2 0.0e+00 1135.6
Bda01g00824 . 35 875 Histidine Kinase Gene Family AT4G16250 64.7 0.0e+00 1115.9
Bda08g00333 CCT 1 676 Histidine Kinase Gene Family AT4G16250 71.4 7.2e-287 983.8
Bda07g00948 . 14 1108 Histidine Kinase Gene Family AT4G18130 60.6 0.0e+00 1332.0
Bda11g00500 CCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1252.7
Bda01g00824 . 14 871 Histidine Kinase Gene Family AT4G18130 68.5 0.0e+00 1168.7
Bda08g00333 CCT 1 677 Histidine Kinase Gene Family AT4G18130 54.3 1.6e-211 733.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01665 Bda_Chr01 FPKM 155.558685 136.463699 461.549927 432.014923 76.685997 64.925354 84.397324 128.796371 169.44812