Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01749 ATGGAGATACAGTTGCCGGACGATTTCAAATGTCCGATTTCGCTGGAAATAATGTCCGACCCCGTCATTCTCTCGTCCGGTCATACTTTTGACCGGAGTTCCATCCAGAAATGGCTTAACGCCGGCCACCGGACTTGTCCTATCACTAAACTACCCTTGACGAACCATCCATCCCTTATCCCAAACCACGCTCTCAGGAGCCTGATTTCAAACTATTGCCTTGTTTCTCTACCAAATCCTCAACAATCTCCGCCGGAGCTTAAATCCCTTTTCTTCATTCTAACTTCTCCCAGATCCTCGCTCGACTCGAGAATCGATTCGCTCAGTCAACTCGCTCTCGTTTGCAAGGGCGACTCAACTTTGCGTCGGAAACTGACTGAGTCTGGTGCTGTGTCTGCAATTCTGAAATGCGTTGGTTCCAATGAAGCGAGACTGCAAGAAAAAGCGCTGTCTTTGCTGCTCAATCTTAGCTTAGACGACGACAACAAAGTGGGTTTGGTAGCTGAAGGTGCAATTGGGCTCACTGTCGACGCCTTACTAGGTGAGTCGCCGGATATCCGAGCAATGGCTGCAACTATGCTTACAAGCTTGGCTGTGGTAGAGGTAAACAAGGCAACAATCGGGGCGTACCCAACGGCGATCCGAGCTCTGGTTAAGCTTCTTCGTGATGGTAGATCGAGGGAGAAGAAAGAAGCTGCAACTGCCCTTTACGCCATTTGTTCTTTCCCCGATAATCGCCAGAGAGCAGTCGAATGTGGAGCTGTTCCGATTCTGATTCGGGCTGTCAACTCGGGGCTCCAAAGGGCAGTCGAAGTGCTTGGCCTTTTGGCCAAATGTCGAGAAGGCAGAGAGCAGATGGACATGCTTGATGGCTGTCTGCAGATTTTGATTGGAGTCTTGAGAAATGGTGGATCGAGAGGGATTCAATACGCCCTGCTGACGCTGAATTTGCTCTGCAGTAATTGCGAAGAAATACGCTCAGAGGCAAGAAGAGAAGGGGTTTCAGAGATATGTATCAAATTGGTTGAAGAAAACAATGAAAAGATCAAAAAAAATGCTTCAGACTTGATTAAAATTTTGCAAAGTAGGTAA 1092 47.99 MEIQLPDDFKCPISLEIMSDPVILSSGHTFDRSSIQKWLNAGHRTCPITKLPLTNHPSLIPNHALRSLISNYCLVSLPNPQQSPPELKSLFFILTSPRSSLDSRIDSLSQLALVCKGDSTLRRKLTESGAVSAILKCVGSNEARLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVDALLGESPDIRAMAATMLTSLAVVEVNKATIGAYPTAIRALVKLLRDGRSREKKEAATALYAICSFPDNRQRAVECGAVPILIRAVNSGLQRAVEVLGLLAKCREGREQMDMLDGCLQILIGVLRNGGSRGIQYALLTLNLLCSNCEEIRSEARREGVSEICIKLVEENNEKIKKNASDLIKILQSR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53663078 53664169 + Bda004033.1 Bda01g01749 1749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01749 363 SUPERFAMILY RING/U-box 3 74 - -
Bda01g01749 363 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Bda01g01749 363 Coils Coil 339 359 - -
Bda01g01749 363 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Bda01g01749 363 Gene3D - 268 361 IPR011989 -
Bda01g01749 363 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Bda01g01749 363 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Bda01g01749 363 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bda01g01749 363 SMART arm_5 159 199 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 118 158 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 203 241 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 322 362 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 242 278 IPR000225 GO:0005515
Bda01g01749 363 CDD RING-Ubox_PUB 9 50 IPR045210 -
Bda01g01749 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Bda01g01749 363 SUPERFAMILY ARM repeat 87 357 IPR016024 -
Bda01g01749 363 Gene3D - 82 267 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01749 - - - vvi:100855109 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01749 Bda-Chr1:53663078 Bda09g01286 Bda-Chr9:44634210 1.15E-174 dispersed
Bda01g01770 Bda-Chr1:53948316 Bda01g01749 Bda-Chr1:53663078 3.39E-31 dispersed
Bda01g01749 Bda-Chr1:53663078 Bda07g00590 Bda-Chr7:7230889 2.42E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004862 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01749 Bda_Chr01 FPKM 242.957077 282.776642 275.289551 272.082672 149.841232 111.980827 143.68483 103.698753 117.383041