Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01749 ATGGAGATACAGTTGCCGGACGATTTCAAATGTCCGATTTCGCTGGAAATAATGTCCGACCCCGTCATTCTCTCGTCCGGTCATACTTTTGACCGGAGTTCCATCCAGAAATGGCTTAACGCCGGCCACCGGACTTGTCCTATCACTAAACTACCCTTGACGAACCATCCATCCCTTATCCCAAACCACGCTCTCAGGAGCCTGATTTCAAACTATTGCCTTGTTTCTCTACCAAATCCTCAACAATCTCCGCCGGAGCTTAAATCCCTTTTCTTCATTCTAACTTCTCCCAGATCCTCGCTCGACTCGAGAATCGATTCGCTCAGTCAACTCGCTCTCGTTTGCAAGGGCGACTCAACTTTGCGTCGGAAACTGACTGAGTCTGGTGCTGTGTCTGCAATTCTGAAATGCGTTGGTTCCAATGAAGCGAGACTGCAAGAAAAAGCGCTGTCTTTGCTGCTCAATCTTAGCTTAGACGACGACAACAAAGTGGGTTTGGTAGCTGAAGGTGCAATTGGGCTCACTGTCGACGCCTTACTAGGTGAGTCGCCGGATATCCGAGCAATGGCTGCAACTATGCTTACAAGCTTGGCTGTGGTAGAGGTAAACAAGGCAACAATCGGGGCGTACCCAACGGCGATCCGAGCTCTGGTTAAGCTTCTTCGTGATGGTAGATCGAGGGAGAAGAAAGAAGCTGCAACTGCCCTTTACGCCATTTGTTCTTTCCCCGATAATCGCCAGAGAGCAGTCGAATGTGGAGCTGTTCCGATTCTGATTCGGGCTGTCAACTCGGGGCTCCAAAGGGCAGTCGAAGTGCTTGGCCTTTTGGCCAAATGTCGAGAAGGCAGAGAGCAGATGGACATGCTTGATGGCTGTCTGCAGATTTTGATTGGAGTCTTGAGAAATGGTGGATCGAGAGGGATTCAATACGCCCTGCTGACGCTGAATTTGCTCTGCAGTAATTGCGAAGAAATACGCTCAGAGGCAAGAAGAGAAGGGGTTTCAGAGATATGTATCAAATTGGTTGAAGAAAACAATGAAAAGATCAAAAAAAATGCTTCAGACTTGATTAAAATTTTGCAAAGTAGGTAA 1092 47.99 MEIQLPDDFKCPISLEIMSDPVILSSGHTFDRSSIQKWLNAGHRTCPITKLPLTNHPSLIPNHALRSLISNYCLVSLPNPQQSPPELKSLFFILTSPRSSLDSRIDSLSQLALVCKGDSTLRRKLTESGAVSAILKCVGSNEARLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVDALLGESPDIRAMAATMLTSLAVVEVNKATIGAYPTAIRALVKLLRDGRSREKKEAATALYAICSFPDNRQRAVECGAVPILIRAVNSGLQRAVEVLGLLAKCREGREQMDMLDGCLQILIGVLRNGGSRGIQYALLTLNLLCSNCEEIRSEARREGVSEICIKLVEENNEKIKKNASDLIKILQSR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53663078 53664169 + Bda004033.1 Bda01g01749 1749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01749 363 SUPERFAMILY RING/U-box 3 74 - -
Bda01g01749 363 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Bda01g01749 363 Coils Coil 339 359 - -
Bda01g01749 363 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Bda01g01749 363 Gene3D - 268 361 IPR011989 -
Bda01g01749 363 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Bda01g01749 363 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Bda01g01749 363 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bda01g01749 363 SMART arm_5 159 199 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 118 158 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 203 241 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 322 362 IPR000225 GO:0005515
Bda01g01749 363 SMART arm_5 242 278 IPR000225 GO:0005515
Bda01g01749 363 CDD RING-Ubox_PUB 9 50 IPR045210 -
Bda01g01749 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Bda01g01749 363 SUPERFAMILY ARM repeat 87 357 IPR016024 -
Bda01g01749 363 Gene3D - 82 267 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01749 Bda-Chr1:53663078 Bda09g01286 Bda-Chr9:44634210 1.15E-174 dispersed
Bda01g01770 Bda-Chr1:53948316 Bda01g01749 Bda-Chr1:53663078 3.39E-31 dispersed
Bda01g01749 Bda-Chr1:53663078 Bda07g00590 Bda-Chr7:7230889 2.42E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01749 - - vvi:100855109 492.271