Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01769 GTGAACAATATAATAAAAGTCGATAACAACACAAACGATGCAGTCATCTGCTACGCGCCGACGATGATAACCACAAACGGCATTTGGCAAGGCGACAACCCTTTGGATTACTCCCTTCCTCTCTTCGTTTTGCAATTATCACTCGTCGTCATTCTCACTCGCGTCCTCGTTTTCCTTCTCAAACCATTCCGCCAACCTCGCGTCGTCTCTGAAATCTTGGCTGGAATAATTTTGGGTCCTTCAGTTCTTGGACAGAGTACCACATTTGCCGACTCCATGTTTCCTCTGAGAAGTGTAATGGTGCTTGAAACAATGGCAAATGTGGGTCTTCTCTATTTTCTCTTCTTAGTCGGAGTGGAGATGGACCTGGCTGTCATTCGTCGAACTGGCCGGAAAGCCATGGCCATAGGCGCCGCGGGAATGGTTCTTCCCTTCATGATAGGAGCCTGCTTCTCCGTCGTCTTCCATAAAACAGATTACTCGATGAGCACAGGCACTTTCATTCTCTTCACAGGCGTTTCCCTATCCGTCACTGCATTTCCTGTGCTCGCTAGAGTACTTGCGGAGCTAAAACTCATTAACACCGAGCTCGGAAGGGTTGCAATGGCGTCAGCGCTTTTCAATGACATGTTTGCCTGGATACTTCTGGCCATAGCTATTGCTCTTACGGAAAATCAAGAGACTTCTTTAGCTTCAATTTGGATCATTTTATCGAGTCTCGGCTTTGTTACCTTCGCCATCTTGGCCGTTCGCCCCGCCATTGGGTGGATAATTAGACGGACGCCGGAGGGTGAACCGTTCAGTGACTTTCATATCTGTCTCGTTCTCACCGGCGTAATGATCTCAGGGTTTATTACGGACGCCATCGGAACCCATTCCATTTTTGGAGCTTTTGTGTTTGGTCTTGTTATTCCAAATGGATCACTTGGGATTACTTTGATAGAGAAGCTTGAGGATTTTGTTTCAGGGCTTCTACTTCCTCTCTTTTTCGCCATTAGTGGGCTAAAGACAGATATTTCCACCATTAAAGGACCTCAAACTTGGGGGATCCTACTTCTTCTCATTTTTTCTGCTGGTGCTGGTAAAGTTGCAGGCACTCTCGTGGCTTCCCTTTTTTATCACATGCCTTGTAACGAAGGAATCTCTCTGGGTCTGCTCATGAACACCAAAGGCCTCATTGAGATGATCATCCTTAATGTCGGAAAAGACCACAAGGTGTTAGACAATAGGTCATTTGCAATAATGGTGATAGTGTCGCTGATAATGACTGCGCTAATAACCCCAATAGTGACTGTAATTTACAAGCCAGCAAGGAGGTTTACGCCCTACAAAAAGAGGACGATTGAGAGATCCAAACCAGATTCTGAGCTAAGGGTTTTGGTTTGTGTTCATACTCCCAGAAACGTTCCGACAATCATTAATCTTCTCGAAGCGTCAAACCCAACAAAACGATCCCCCATTTGCATCTACGTCCTCCACCTGGTCGAGCTCACCGGACGTGCCTCCGCCATGCTCATCGTTCACAGCACCCACACGTCGGGCCGCACCTCCCACAACTCCCAGGCGCAGTCGGACCACATCATCAACGCCTTCGAGAACTACGAGCAGCATGCTGGCTGCGTTTCAGTGCAGCCACTCACTGCCATTTCTCCCTACTCCACCATGCACGAAGACATCTGCAGCTTGGCCGAAGACAAGAGAGTCGCGTTCGTTATAATCCCGTTTCACAAGCAGCAGACGGTGGATGGAGGAATGGAGGCAGCTAACCCAGCTTTTCGAACGGTGAACCAGAATCTGCTGGCCAACGCACCTTGCTCCGTGGGGATTTTGGTGGACCGAGGGTTGAGTGGTTCGACTAGATTGGCTCCCACGCAGGTCTCTCACAATGTTGCGGTTCTCTTCTTTGGGGGTCACGACGATAGAGAAGCTCTCTCGTACGCATGGCGGATGTCAGAGCATCCCGGAGTTAGCCTCAACGTGATGCGGTTCGTCCCCGGAAAAGACTCACATTCTGTCTCCAAGCCGAAGGAGATGAAGTCTGATGACCAGAGGCCCCTCCCGGTGGTTACAGGCGTGGAAAGACAAAAACAACTGGACGACGCGCTGTTGAACGAGTTCAGGATTAAAACAGTGGGCAACAAGTCGGTTGTTTATACAGAAAAAGTGGCGAATAATGGAGAAGAAACAGTGGCATCAATAAGATCAATGGGCAACAATCATGATCTGTTCATAGTTGGGAGAGGGCAAGGGACGGTGTCGCCGCTCACTGCAGGGATGACTGACTGGAGCGAGTGCCCGGAGCTGGGGGCCATTGGAGACCTGCTTGCGGCCTCCGATTTTTCATCCACCGCTTCGGTGTTGGTGGTGCAGCAATACGTCGGAGAAGGTCCACACGGGGACGGAGTGGGGACGGTTGATAGCCCTACCGGGCGAGTTGAGGAACACATGACCCACTCATGGCAAATGAACGTGAGGCCTCAGCCACCGGCAAGGCCTCACCCTGTCTTCTCCCAG 2514 50.16 VNNIIKVDNNTNDAVICYAPTMITTNGIWQGDNPLDYSLPLFVLQLSLVVILTRVLVFLLKPFRQPRVVSEILAGIILGPSVLGQSTTFADSMFPLRSVMVLETMANVGLLYFLFLVGVEMDLAVIRRTGRKAMAIGAAGMVLPFMIGACFSVVFHKTDYSMSTGTFILFTGVSLSVTAFPVLARVLAELKLINTELGRVAMASALFNDMFAWILLAIAIALTENQETSLASIWIILSSLGFVTFAILAVRPAIGWIIRRTPEGEPFSDFHICLVLTGVMISGFITDAIGTHSIFGAFVFGLVIPNGSLGITLIEKLEDFVSGLLLPLFFAISGLKTDISTIKGPQTWGILLLLIFSAGAGKVAGTLVASLFYHMPCNEGISLGLLMNTKGLIEMIILNVGKDHKVLDNRSFAIMVIVSLIMTALITPIVTVIYKPARRFTPYKKRTIERSKPDSELRVLVCVHTPRNVPTIINLLEASNPTKRSPICIYVLHLVELTGRASAMLIVHSTHTSGRTSHNSQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDICSLAEDKRVAFVIIPFHKQQTVDGGMEAANPAFRTVNQNLLANAPCSVGILVDRGLSGSTRLAPTQVSHNVAVLFFGGHDDREALSYAWRMSEHPGVSLNVMRFVPGKDSHSVSKPKEMKSDDQRPLPVVTGVERQKQLDDALLNEFRIKTVGNKSVVYTEKVANNGEETVASIRSMGNNHDLFIVGRGQGTVSPLTAGMTDWSECPELGAIGDLLAASDFSSTASVLVVQQYVGEGPHGDGVGTVDSPTGRVEEHMTHSWQMNVRPQPPARPHPVFSQ 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53936533 53939285 + Bda032977 Bda01g01769 1769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01769 838 PANTHER CATION/H(+) ANTIPORTER 15 11 832 - -
Bda01g01769 838 MobiDBLite consensus disorder prediction 817 838 - -
Bda01g01769 838 Pfam Sodium/hydrogen exchanger family 49 430 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bda01g01769 838 Gene3D - 477 760 - -
Bda01g01769 838 Gene3D - 41 440 IPR038770 -
Bda01g01769 838 PANTHER CATION/H + ANTIPORTER 11 832 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01769 - - - pvy:116140351 1219.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01769 Bda-Chr1:53936533 Bda07g00029 Bda-Chr7:467471 0 dispersed
Bda14g00229 Bda-Chr14:1556031 Bda01g01769 Bda-Chr1:53936533 4.02E-159 dispersed
Bda15g00266 Bda-Chr15:5278675 Bda01g01769 Bda-Chr1:53936533 3.92E-156 dispersed
Bda01g01769 Bda-Chr1:53936533 Bda03g00840 Bda-Chr3:7189169 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00029 . 11 793 Antiporter Super Family AT2G13620 71.8 0.0e+00 1146.3
Bda01g01769 . 10 821 Antiporter Super Family AT2G13620 69.4 0.0e+00 1120.1
Bda06g00131 . 858 1560 Antiporter Super Family AT3G53720 50.8 7.4e-187 651.0
Bda03g00840 . 93 771 Antiporter Super Family AT3G53720 50.5 2.4e-185 646.0
Bda06g00131 . 786 1556 Antiporter Super Family AT5G41610 68.4 2.4e-297 1018.1
Bda03g00840 . 16 771 Antiporter Super Family AT5G41610 64.8 1.6e-277 952.2
Bda06g00131 . 1 803 Antiporter Super Family AT4G23700 65.6 1.6e-293 1005.4
Bda03g00840 . 16 770 Antiporter Super Family AT4G23700 61.4 2.7e-264 908.3
Bda03g00840 . 13 785 Antiporter Super Family AT3G17630 71.8 2.0e-312 1068.1
Bda06g00131 . 780 1555 Antiporter Super Family AT3G17630 63.8 2.2e-271 931.8
Bda06g00131 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.5e-230 795.4
Bda03g00840 . 15 770 Antiporter Super Family AT1G64170 55.2 6.7e-223 770.8
Bda07g00029 . 11 793 Antiporter Super Family AT2G13620 71.8 0.0e+00 1146.3
Bda01g01769 . 10 821 Antiporter Super Family AT2G13620 69.4 0.0e+00 1120.1
Bda06g00131 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.5e-230 795.4
Bda03g00840 . 15 770 Antiporter Super Family AT1G64170 55.2 6.7e-223 770.8
Bda06g00131 . 1 803 Antiporter Super Family AT4G23700 65.6 1.6e-293 1005.4
Bda03g00840 . 16 770 Antiporter Super Family AT4G23700 61.4 2.7e-264 908.3
Bda06g00131 . 786 1556 Antiporter Super Family AT5G41610 68.4 2.4e-297 1018.1
Bda03g00840 . 16 771 Antiporter Super Family AT5G41610 64.8 1.6e-277 952.2
Bda03g00840 . 13 785 Antiporter Super Family AT3G17630 71.8 2.0e-312 1068.1
Bda06g00131 . 780 1555 Antiporter Super Family AT3G17630 63.8 2.2e-271 931.8
Bda06g00131 . 858 1560 Antiporter Super Family AT3G53720 50.8 7.4e-187 651.0
Bda03g00840 . 93 771 Antiporter Super Family AT3G53720 50.5 2.4e-185 646.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39