Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01773 ATGTTGGATACCACTGTTTCTTCTGATCCTCCATCTCCCTTTGCGTCCTTCGAAAATGGGGTCACTTGCAAAAGGAAAAGAAGACCAGCAGGAACTCCAGATCCAGACGCAGAAGTGGTTTCTCTATCTCCAAGGACTTTGCTGGAATCAGATCGATACGTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGGGAGACGGAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAGCCGACGTGCTTGCACCACGACCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTCCGGCGTAAACACAGCAACCACAAGCAGTGGACTTGTGACAAATGCTCCAAAAGCTACGCCGTTCAATCAGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGCCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTAGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGCGGCCTGGGTTTCCGGCGACCCAGCCAGCCTGCTCTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCTACAATGCCGAAGCTTCTCAGCAGGCCAACTCAACCAATATTCTTGAGATCCGATCAAATGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTTGAACTTCAGCTCCTTCCGATGTCATCACATCCGAACGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCATCAACCGAAGGTGGCAGAAAGGAAGAAATAAAGAAACACGTTTCAGAAACCCGGGAGAAAAATGACATTGTTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAGATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCTAGACGAGAAGCCAAACGACAGATCGAAATTGCCGAAATGGAATTCGGAAACGCAAAAAGAATAAGGCAGCAAGCCATAGCCGACCTCGAAAAAGCAGAGATTTTGAAAGAGAACGCAACGAGAAAGATGAGCTCCACCATTCTGCAAATCACTTGCCAAGCATGCAAACGACAATTCCAGCCGCCGTCAATGGCGGCGCTGGCACTGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCCTCCGCCACCACCGAAGGCGATGGAGAATGA 1257 49.09 MLDTTVSSDPPSPFASFENGVTCKRKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDKCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGFPATQPACSSRSASSTSPSTDADFGKATMPKLLSRPTQPIFLRSDQMNYNYSSSTSGFQEHNLELQLLPMSSHPNEIFATHLKLSIGSSTEGGRKEEIKKHVSETREKNDIVPALEVMRLREYSTEDLRKLAMAEMAYAEEARREAKRQIEIAEMEFGNAKRIRQQAIADLEKAEILKENATRKMSSTILQITCQACKRQFQPPSMAALALSDETSLAMSYMSSATTEGDGE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53969933 53971646 - Bda004062.1 Bda01g01773 1773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01773 418 MobiDBLite consensus disorder prediction 189 215 - -
Bda01g01773 418 Gene3D Classic Zinc Finger 115 190 - -
Bda01g01773 418 PANTHER OS03G0310200 PROTEIN 7 418 IPR039288 GO:0009630
Bda01g01773 418 MobiDBLite consensus disorder prediction 1 15 - -
Bda01g01773 418 Coils Coil 315 370 - -
Bda01g01773 418 MobiDBLite consensus disorder prediction 189 209 - -
Bda01g01773 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Bda01g01773 418 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 7 418 - -
Bda01g01773 418 SMART c2h2final6 53 75 IPR013087 -
Bda01g01773 418 SMART c2h2final6 94 124 IPR013087 -
Bda01g01773 418 SMART c2h2final6 130 157 IPR013087 -
Bda01g01773 418 SUPERFAMILY beta-beta-alpha zinc fingers 52 150 IPR036236 -
Bda01g01773 418 Gene3D Classic Zinc Finger 30 97 - -
Bda01g01773 418 Pfam Zinc finger, C2H2 type 131 151 IPR013087 -
Bda01g01773 418 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
Bda01g01773 418 MobiDBLite consensus disorder prediction 1 39 - -
Bda01g01773 418 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01773 Bda-Chr1:53969933 Bda06g00840 Bda-Chr6:11647348 9.40E-170 dispersed
Bda01g01773 Bda-Chr1:53969933 Bda10g00123 Bda-Chr10:3211502 6.84E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15469 PF00096 zf-C2H2 0.0039 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01773 K25871 - cpap:110823858 567.385