Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01773 | ATGTTGGATACCACTGTTTCTTCTGATCCTCCATCTCCCTTTGCGTCCTTCGAAAATGGGGTCACTTGCAAAAGGAAAAGAAGACCAGCAGGAACTCCAGATCCAGACGCAGAAGTGGTTTCTCTATCTCCAAGGACTTTGCTGGAATCAGATCGATACGTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGGGAGACGGAGGAGGTGAAGAAGAAGGTGTTTGTTTGCCCTGAGCCGACGTGCTTGCACCACGACCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTCCGGCGTAAACACAGCAACCACAAGCAGTGGACTTGTGACAAATGCTCCAAAAGCTACGCCGTTCAATCAGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGCCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTAGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGCGGCCTGGGTTTCCGGCGACCCAGCCAGCCTGCTCTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCTACAATGCCGAAGCTTCTCAGCAGGCCAACTCAACCAATATTCTTGAGATCCGATCAAATGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTTGAACTTCAGCTCCTTCCGATGTCATCACATCCGAACGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCATCAACCGAAGGTGGCAGAAAGGAAGAAATAAAGAAACACGTTTCAGAAACCCGGGAGAAAAATGACATTGTTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAGATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCTAGACGAGAAGCCAAACGACAGATCGAAATTGCCGAAATGGAATTCGGAAACGCAAAAAGAATAAGGCAGCAAGCCATAGCCGACCTCGAAAAAGCAGAGATTTTGAAAGAGAACGCAACGAGAAAGATGAGCTCCACCATTCTGCAAATCACTTGCCAAGCATGCAAACGACAATTCCAGCCGCCGTCAATGGCGGCGCTGGCACTGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCCTCCGCCACCACCGAAGGCGATGGAGAATGA | 1257 | 49.09 | MLDTTVSSDPPSPFASFENGVTCKRKRRPAGTPDPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDKCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGFPATQPACSSRSASSTSPSTDADFGKATMPKLLSRPTQPIFLRSDQMNYNYSSSTSGFQEHNLELQLLPMSSHPNEIFATHLKLSIGSSTEGGRKEEIKKHVSETREKNDIVPALEVMRLREYSTEDLRKLAMAEMAYAEEARREAKRQIEIAEMEFGNAKRIRQQAIADLEKAEILKENATRKMSSTILQITCQACKRQFQPPSMAALALSDETSLAMSYMSSATTEGDGE | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 53969933 | 53971646 | - | Bda004062.1 | Bda01g01773 | 1773 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01773 | 418 | MobiDBLite | consensus disorder prediction | 189 | 215 | - | - | |
Bda01g01773 | 418 | Gene3D | Classic Zinc Finger | 115 | 190 | - | - | |
Bda01g01773 | 418 | PANTHER | OS03G0310200 PROTEIN | 7 | 418 | IPR039288 | GO:0009630 | |
Bda01g01773 | 418 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Bda01g01773 | 418 | Coils | Coil | 315 | 370 | - | - | |
Bda01g01773 | 418 | MobiDBLite | consensus disorder prediction | 189 | 209 | - | - | |
Bda01g01773 | 418 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 75 | IPR013087 | - | |
Bda01g01773 | 418 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 7 | 418 | - | - | |
Bda01g01773 | 418 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - | |
Bda01g01773 | 418 | SMART | c2h2final6 | 94 | 124 | IPR013087 | - | |
Bda01g01773 | 418 | SMART | c2h2final6 | 130 | 157 | IPR013087 | - | |
Bda01g01773 | 418 | SUPERFAMILY | beta-beta-alpha zinc fingers | 52 | 150 | IPR036236 | - | |
Bda01g01773 | 418 | Gene3D | Classic Zinc Finger | 30 | 97 | - | - | |
Bda01g01773 | 418 | Pfam | Zinc finger, C2H2 type | 131 | 151 | IPR013087 | - | |
Bda01g01773 | 418 | Pfam | Zinc finger, C2H2 type | 53 | 75 | IPR013087 | - | |
Bda01g01773 | 418 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Bda01g01773 | 418 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01773 | Bda-Chr1:53969933 | Bda06g00840 | Bda-Chr6:11647348 | 9.40E-170 | dispersed | |
Bda01g01773 | Bda-Chr1:53969933 | Bda10g00123 | Bda-Chr10:3211502 | 6.84E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15469 | PF00096 | zf-C2H2 | 0.0039 | CL0361 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01773 | K25871 | - | cpap:110823858 | 567.385 |