Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01785 TTTTTTGTCGATGAGCTTCCTCTTTTACCCAAGCTTTATGGCTTTCGCGTGGACTATGATCAGGGCCGTCGTCTTCTCCGACCTAACTCTCTCGTCATCGGCATGTTTCGTAAAACATGGAAATTTCACAGAGACCTTCCTTCAACGCCGGTTTTCGCCTACGGTGTCTCCGAGGAAAAGGCAACAGTACCTGGTCCCACCATCGAGGCACGCCATGGCGTTCCAACCTACGTCACCTGGGAAAATCACCTCCCCTCGAAGCACATTCTCCCGTGGGACCATACAATTCCGACCGCCATCCCCGCCAGCCGGCGTGGAGTCCCGACTGTAGTTCACCTCCACGGCGGCATCACGGAGCCATCAAGCGATGGCCATTCCGGTGCCTGGTTCACCGCCGGATTCGTGGATAAGGGTCCCACCTGGACTCACCAAACATATCGCTACCACAACCAACAACACCCCGGAACTCTATGGTACCACGACCATGCCATGGGTTTGACTCGAGTCAACCTTCTCGCCGGTCTCATCGGCTCCTACATTGTTCGACATCCCGAGGTTGAAGCCCCACTACGACTGCCCGCAGGCGAGGAGTTTGATAGAACGCTAGTCGTCTTTGATCGTAGTTTCCGCTCTGACGGCTCCATATACATGAATTCCACCGGAAACAACCCCTCTATACACCCCCAGTGGCAGCCTGAATACTTCGGAGACACCATCATCGTCAACGGCAAAGTTTGGCCCAAGATGATCGCGCGACGCCGTAAATACAGGTTCCGAATCATCAATGCAAGCAATGCTAGATTCTTCAGATTCTTCTTCACCAACGGCCTTAGATTTACGTACGTCGCTTCAGACTCCAGCTACCTTGATAAGCCAGTCACGACCGGCGCCGTCTTCCTCGCACCCTCCGAGATTGCAAACGTGGTGGTTGACTTCTCGGAGTCAAAGGACGATCATGTAATCCTGGCCAACGACGCGCCGTACCCCTATCCGTCTGGCGACCCAGTAAACGAATTCAACGGAATGGTGATGAAGGTTTTCATCAACAGTCGATCAGAATCAGAAAAATGGCGGATCCCGGCTACGCTGATTAAATACCCATCTCTCGATCTAGCGTCTGCCACTCGCACGCGGTACATATCACTGCATGAGTACACGAGTAAGACCGACGAGCCAACTCATCTATACATAAACGGGGTGCCGTTTGAGGCGCCGGCAACGGAGAAACCGAGGGTGGGTACGACGGAGATATGGAATGTGATAAACCTGACGGAGGACAATCATCCTCTGCACATCCACGTAGGGCTGGTGAAGGCGGTGGAGCAGCGGGAGCTGGTAAAGCCGGAAAAGTTCAAACAATGCATGATGAAGAAGAATGACGCAGTCAAATGCAAAATAAAAAAGTACCTCGGGAGGAGAAGCGTGGCAGTGGAGGCGCAGGAGAAGGGGTGGAAGAACGTCTACAAGATGATGCCTGGATTTGTGACCAAGTTGGCCGTCCGATTTGCTCCAATAGATTCCGACAACGCCTCCTATCCCTTCGACGCGACAGCAGAGCCTGGCTACGCCTACCATTGCCACATTCTGGATCACGAAGACAATGTGATGATGCGGCCATTGAAGCTCCTCGAG 1632 53.25 FFVDELPLLPKLYGFRVDYDQGRRLLRPNSLVIGMFRKTWKFHRDLPSTPVFAYGVSEEKATVPGPTIEARHGVPTYVTWENHLPSKHILPWDHTIPTAIPASRRGVPTVVHLHGGITEPSSDGHSGAWFTAGFVDKGPTWTHQTYRYHNQQHPGTLWYHDHAMGLTRVNLLAGLIGSYIVRHPEVEAPLRLPAGEEFDRTLVVFDRSFRSDGSIYMNSTGNNPSIHPQWQPEYFGDTIIVNGKVWPKMIARRRKYRFRIINASNARFFRFFFTNGLRFTYVASDSSYLDKPVTTGAVFLAPSEIANVVVDFSESKDDHVILANDAPYPYPSGDPVNEFNGMVMKVFINSRSESEKWRIPATLIKYPSLDLASATRTRYISLHEYTSKTDEPTHLYINGVPFEAPATEKPRVGTTEIWNVINLTEDNHPLHIHVGLVKAVEQRELVKPEKFKQCMMKKNDAVKCKIKKYLGRRSVAVEAQEKGWKNVYKMMPGFVTKLAVRFAPIDSDNASYPFDATAEPGYAYHCHILDHEDNVMMRPLKLLE 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54055893 54057914 - Bda032979 Bda01g01785 1785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01785 544 Pfam Multicopper oxidase 108 184 IPR011707 GO:0005507
Bda01g01785 544 Gene3D - 1 181 IPR008972 -
Bda01g01785 544 SUPERFAMILY Cupredoxins 35 185 IPR008972 -
Bda01g01785 544 Gene3D - 185 364 IPR008972 -
Bda01g01785 544 CDD CuRO_2_CotA_like 198 345 - -
Bda01g01785 544 Gene3D - 365 544 IPR008972 -
Bda01g01785 544 CDD CuRO_1_BOD_CotA_like 28 185 - -
Bda01g01785 544 Pfam Multicopper oxidase 244 324 IPR001117 -
Bda01g01785 544 PANTHER MULTI-COPPER OXIDASE 3 540 IPR045087 -
Bda01g01785 544 SUPERFAMILY Cupredoxins 197 314 IPR008972 -
Bda01g01785 544 PANTHER MULTICOPPER OXIDASE LPR1 3 540 - -
Bda01g01785 544 Pfam Multicopper oxidase 383 540 IPR011706 GO:0005507|GO:0016491
Bda01g01785 544 SUPERFAMILY Cupredoxins 367 540 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01785 - - - mcha:111015632 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01785 Bda-Chr1:54055893 Bda01g01807 Bda-Chr1:54279488 0 dispersed
Bda01g01785 Bda-Chr1:54055893 Bda14g01005 Bda-Chr14:8456809 5.86E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1005 Blo01g00465 . Bda01g01785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0515 . . . . . . . . . Bpe02g01962 Bma01g00137 . . . Cmo15g00882 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006017 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 3 3 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01785 Bda_Chr01 FPKM 7.997848 8.835752 5.507655 6.006626 3.240709 3.624506 3.415082 8.200234 8.119577