Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01787 ATGAGGAAACCTCATTTGGGTTTTGGGAGTTTCTTCATAATATTGACGTTTTTGCTCCTGCTCCTCTTCAACGTTTCCGTTCACTCTCAACCTTGCGGCGACAAGGCTGCAATGGAGGCTTTGAAAAATAGCATTGAAGAAACGAGCTCTTTTGGATGGACCGACTCAAACTGCTGCAATTGGTCTCATGTGTTTTGTAACTCTAACAGGGTGTCATCCATTCAAATCGGAAACCAAAATTTGTCCGGCTCACTCCCTCCTGAACTCATTAATCTCTCCGCTCTAACGCGATTCGAGGTTCATAACAACAGTCTGACTGGCTCCTTTCCAAACTTACCCGGAACGTTGACAACCCTTTTGGCCCACGGCAACCAGTTTAGTTCCTTCCCCATCGATTTCTTCGCTCACAAATCGGCGTTGGAAGAGATAGACATCGATAACAATCCCTTCTCGACATGGCAAATTCCGGAAAGTATCCAAGACGCTACGTCGTTGGCAAAGTTTTCGGCTAACAAAGCTAACCTCACTGGACGAATCCCTGCATTTTTCGGCGGCGGCACATTCCCTAGTCTGACCCATTTGCATTTGGCGATGAATAGTCTCGAAGGAGAAATTCCGGAAACTTTTGCAGGTTCTCGAATTCAGACCTTGTGGTTGAATGGGCAACAGGGCAACACAAAGTTAAACGGCTCCATTTCTGTGCTGCAAAATATGACTTATTTAGGCGAGGTTTGGCTGCATGGAAATCAATTCTCCGGTCCTTTACCTGACTTTTCTAACTTGCAGGGGCTGCAAAATTTGAGTTTAAGAGACAACCAACTGACGGGTATTGTTCCGCCATCTCTGGTGAATTGGAACTCCCTTCTGATAGTAAATTTGACGAATAATTTACTTCAAGGGCCGACTCCAAAGTTCGATTCTGAAGTTCAGGTGGATATGAGCCCAGGGTCGAACAGTTTCTGCACGGATACTCCAGGCGAGCCCTGCGACGCTCGTGTTTATGCTCTGCTATCGGTCGCCCAAGAACTGGGCTACCCATCAATTTTTGCAAAAGCTTGGAAGCTTAACGACCCTTGTAAGAGCTGGACTGGTATCACATGCGATGGGACTGGAAACATCACCATTATCAATTTCACTGGCAGGAACCTAAATGGTACAATTTCTCCAAGCTTTGCTTTGCTTACGTCTGTCAAAAGTTTGTTTCTCTCAAACAATTCTTTAACTGGTGTTATACCGCCTGAGCTTACTACCATGCCTAATCTTGTTGAATTGGATGTTTCTAATAACAACCTTTTCGGCAAAGTGCCATCTTTTTTGAAGAATGTGGTGGTGAGGACTGATGGTAATCCAGATATTGGTAAGGACAGAAGTAGTGTATCTTCGACTGGGAAAGGTAGAAAATCTAGGACTGGATTGATTATTGGGTCTGTTGTTGGAAGTATTGGCGGATTGCTTTTAGTAGGGGCTGTAGCTTTCTTTTTGTTTAGTAAAAGACGAACGCATAGAGGTAGAGGACAAGTTTCGAATACAGCGGTGGTTTCTGGAGGAGGAAAGGCGTTCGATAGTCCTTCGAGCGTTCCGCCTGGGCCGAGCAACATTCACATTGTTGAGGCTGGAAGTATGTCTATGTCTTTTCAGGTTTTGAGGAGTGTGACGAATAATTTCGGTGAAGAAAATGTGTTGGGGAGAGGGGGTTTTGGGTCTGTTTACAAGGGCGATTTGCACGGCACCCAAATTGCAGTCAAGAGGATGGAGCCTGGAGGGGTGACCGAGAAGGGTCTTAACGAGTTTAAGGCTGAGATTACGGTTTTAACGAGTGTTCGACATAGAAATTTGGTGGGACTTCTAGGATATTGCTTGGATGGACATGAGAGGCTTCTTGTTTATGAATATATGCCTCAAGGACCTCTTAGCAGACATCTTTTTGACTGGAAAGATGAAGGAATAGAGCCCCTTGAGTGGACGAGAAGGGTTGCTATTGCATTGGACGTGGCCCGAGGTGTCGAATACTTGCACAGTTTGGCCAATCAATGTTTTATTCATCGCGATCTTAAACCATCCAACATTCTTCTCGGAGACGATATGCGTGCCAAAGTGGCGGACTTTGGGCTGGTAAAGCTTGCTCCGGAAGGTATATCATCTGTCGAAACAAGACTTGCCGGGACATTCGGCTATCTTGCTCCTGAGTATGCAGTGACTGGACGGGTAACGACCAAGATTGATGTGTATAGCTTCGGAGTGATTTTAATGGAGATGATCACAGGCAGAAAAGCGCTGGACGGAAGCCAATCCGAAGGTAGCTTGCATTTAGTGTCATGGTTCCAAAGAATGTCGGTTGAGGAAGGCTTAAACAAAATGATAGACCAGACGATTGGGATAAATGAAGAGACCCTTTGTAGCATTGGTAGAGTAGCTGAATTGGCTAGCCACTGCTGCGCAAGGGAGCCGCACCAACGGCCCGACATGGGCCATATCGTCAACGTCCTTTCTTCCCTGGTGGAAGTGTGGAAGCCGGTAGAGCCTCTTCCCGAACAGGTGACCGGGATTGACTTGAATATGTCGTTAAAAGAGGCGGTTGAGAGGTGGCAGGCCCTCGGAGGAAGTACCAACTTGGACGAACATTCTTTTTCTTCTTCAAGACCTTTTCTTTCCGAGGGGAGAAGGTAA 2667 46.23 MRKPHLGFGSFFIILTFLLLLLFNVSVHSQPCGDKAAMEALKNSIEETSSFGWTDSNCCNWSHVFCNSNRVSSIQIGNQNLSGSLPPELINLSALTRFEVHNNSLTGSFPNLPGTLTTLLAHGNQFSSFPIDFFAHKSALEEIDIDNNPFSTWQIPESIQDATSLAKFSANKANLTGRIPAFFGGGTFPSLTHLHLAMNSLEGEIPETFAGSRIQTLWLNGQQGNTKLNGSISVLQNMTYLGEVWLHGNQFSGPLPDFSNLQGLQNLSLRDNQLTGIVPPSLVNWNSLLIVNLTNNLLQGPTPKFDSEVQVDMSPGSNSFCTDTPGEPCDARVYALLSVAQELGYPSIFAKAWKLNDPCKSWTGITCDGTGNITIINFTGRNLNGTISPSFALLTSVKSLFLSNNSLTGVIPPELTTMPNLVELDVSNNNLFGKVPSFLKNVVVRTDGNPDIGKDRSSVSSTGKGRKSRTGLIIGSVVGSIGGLLLVGAVAFFLFSKRRTHRGRGQVSNTAVVSGGGKAFDSPSSVPPGPSNIHIVEAGSMSMSFQVLRSVTNNFGEENVLGRGGFGSVYKGDLHGTQIAVKRMEPGGVTEKGLNEFKAEITVLTSVRHRNLVGLLGYCLDGHERLLVYEYMPQGPLSRHLFDWKDEGIEPLEWTRRVAIALDVARGVEYLHSLANQCFIHRDLKPSNILLGDDMRAKVADFGLVKLAPEGISSVETRLAGTFGYLAPEYAVTGRVTTKIDVYSFGVILMEMITGRKALDGSQSEGSLHLVSWFQRMSVEEGLNKMIDQTIGINEETLCSIGRVAELASHCCAREPHQRPDMGHIVNVLSSLVEVWKPVEPLPEQVTGIDLNMSLKEAVERWQALGGSTNLDEHSFSSSRPFLSEGRR 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54063441 54066312 + Bda004075.1 Bda01g01787 1787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01787 888 SUPERFAMILY Protein kinase-like (PK-like) 531 842 IPR011009 -
Bda01g01787 888 CDD STKc_IRAK 561 832 - -
Bda01g01787 888 PANTHER RECEPTOR PROTEIN KINASE TMK1 14 877 - -
Bda01g01787 888 Gene3D Ribonuclease Inhibitor 33 328 IPR032675 -
Bda01g01787 888 ProSiteProfiles Protein kinase domain profile. 555 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01787 888 Gene3D Phosphorylase Kinase; domain 1 528 631 - -
Bda01g01787 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Bda01g01787 888 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Bda01g01787 888 Pfam Leucine rich repeat N-terminal domain 34 67 IPR013210 -
Bda01g01787 888 Pfam Leucine rich repeat N-terminal domain 333 368 IPR013210 -
Bda01g01787 888 Gene3D Transferase(Phosphotransferase) domain 1 632 839 - -
Bda01g01787 888 ProSitePatterns Protein kinases ATP-binding region signature. 561 582 IPR017441 GO:0005524
Bda01g01787 888 PANTHER OSJNBA0070M12.3 PROTEIN 14 877 - -
Bda01g01787 888 MobiDBLite consensus disorder prediction 506 527 - -
Bda01g01787 888 SUPERFAMILY L domain-like 65 438 - -
Bda01g01787 888 Pfam Leucine Rich repeats (2 copies) 395 436 IPR025875 -
Bda01g01787 888 SMART serkin_6 555 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01787 888 Pfam Protein tyrosine and serine/threonine kinase 559 829 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01787 - - - csv:101210025 1095.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01787 Bda11g00197 CCT
Bda01g01787 Bda11g00197 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01787 Bda-Chr1:54063441 Bda13g00308 Bda-Chr13:3922451 0 dispersed
Bda01g01787 Bda-Chr1:54063441 Bda11g00197 Bda-Chr11:2518241 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69461 PF07714 PK_Tyr_Ser-Thr 1.90E-45 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01787 Bda_Chr01 FPKM 2.773021 3.103164 0.931216 1.154833 1.464155 1.344746 1.231238 2.321509 2.245585