Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01802 | ATGGGTGACATGAAGGATAAGGTCAAGGGTTTCATGAAAAAGGTTAACGATCAGTTCTCGTCGTCTTCTTCTGGGAAATTCAAAGGGCAAGGTCGAGTTTTAGGCTCGTCTTCATCCGAATCCGCTAATCCTGTTTATTACCGATCGGAGCAGAATCTCAATTCGAAGCCTACTATACCTGCTCCTCCCGTGAGTTCTAAACCTTCGTCTGAAAAACCTCTCATTCCAACTAAGAATAAATCATTATTAGCGAATAACTCGAATTCAGATCTTAAGCCGGTTAATGGGTTTGACCCATTTGACTCGTTGATCACTTCTGGGAAGAGATCACAAAATGGGTATTCGATTGATGTGTATGAATGTCCCATTTGTGGGAAATCTTACAGGTCTGAAGAAGAAGTGTCTATGCATGTGGATAGCTGTGTCGATAATTCAGTTGAAAATAACGGGGAAAGTGGAGCTTCTGGATTGCCCAATAACGACGCTGAGGCTTGCGTTGCTAATTTCTTATCAGCGAAGCCGACAGAAGGCTCCATTGAAGTTCTTTTGAAGCTTGTGAGAAACATAGTGAGGGAGCCAGAGAATTCGAAGTTTAGGAGGATTAGGATGAGTAATCCGAAGATTCGGGAGGCAGTTGGTGATGTCGTAGGTGGGATTGAATTGTTGGAATTAGTCGGGTTTGAACTGACAGAGGAGGATGGCGAGATGTGGGCTGCTATGGAGGTTCCAACTGAAGAAAGAATAAGATTAATAAATGAAGTAATAGCTTTACTTGAACGGCCAAAGCAAGAATCACAACAGAAGAAACCTGACCCGCCATCCATGGCTGCAGCTCCTGCTGATGAACTGATTCAGCCGAAAAAGGTTGACAGGCAGACACGAGTATTCTTTTCCGTCCCGGAAAGTGTAGCGGCGAAAATAGAGATACCTGATTCATTCTATAACCTCTCACTTCAAGAGTTGAAAAGAGAGGCCGATTTGAGGAAGAAAAAGATGGAGTCGTCCCAACTTTTGATCCCCAAATCATACAAGGAAAAGCAGGCAAACGCAGTTCGAAGAAGATACAAAAAAACTATGATTAGGATTCAGTTTCCTGATGGAGTGGTTCTCCAAGGCGTCTTTGCTCCTTGGGAGTCAACTACTGCCTTGTATGAGTTTGTAAGGTCTGCACTAAAAGAACCCGGCCTGCAGTTTGAGCTGTTACATCCCGTCGTTGTCAGACGCAGAGTTATCCCTCGACGCCCCGTCGAAGCGAGCGAGAAGGTGATTACTTTAGAAGAAGAGGATTTGGTCCCATCGGCTCTTATCAAGTTCAGACCAATTGAGACAGAATCGATCGTCTTCACTGGTTTATGCAACGACCTCCTAGAAATGATTGAACCGGTCCCAAATGGCTCTGCATAA | 1404 | 44.37 | MGDMKDKVKGFMKKVNDQFSSSSSGKFKGQGRVLGSSSSESANPVYYRSEQNLNSKPTIPAPPVSSKPSSEKPLIPTKNKSLLANNSNSDLKPVNGFDPFDSLITSGKRSQNGYSIDVYECPICGKSYRSEEEVSMHVDSCVDNSVENNGESGASGLPNNDAEACVANFLSAKPTEGSIEVLLKLVRNIVREPENSKFRRIRMSNPKIREAVGDVVGGIELLELVGFELTEEDGEMWAAMEVPTEERIRLINEVIALLERPKQESQQKKPDPPSMAAAPADELIQPKKVDRQTRVFFSVPESVAAKIEIPDSFYNLSLQELKREADLRKKKMESSQLLIPKSYKEKQANAVRRRYKKTMIRIQFPDGVVLQGVFAPWESTTALYEFVRSALKEPGLQFELLHPVVVRRRVIPRRPVEASEKVITLEEEDLVPSALIKFRPIETESIVFTGLCNDLLEMIEPVPNGSA | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54239173 | 54241722 | + | Bda004093.2 | Bda01g01802 | 1802 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01802 | 467 | SUPERFAMILY | Ubiquitin-like | 328 | 438 | IPR029071 | - | |
Bda01g01802 | 467 | MobiDBLite | consensus disorder prediction | 15 | 60 | - | - | |
Bda01g01802 | 467 | MobiDBLite | consensus disorder prediction | 70 | 87 | - | - | |
Bda01g01802 | 467 | Gene3D | - | 168 | 260 | - | - | |
Bda01g01802 | 467 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
Bda01g01802 | 467 | Pfam | PUB domain | 175 | 248 | IPR018997 | - | |
Bda01g01802 | 467 | CDD | PUB | 164 | 260 | - | - | |
Bda01g01802 | 467 | Gene3D | - | 347 | 440 | - | - | |
Bda01g01802 | 467 | SUPERFAMILY | PUG domain-like | 172 | 258 | IPR036339 | - | |
Bda01g01802 | 467 | PANTHER | PLANT UBX DOMAIN-CONTAINING PROTEIN 2 | 1 | 464 | - | - | |
Bda01g01802 | 467 | MobiDBLite | consensus disorder prediction | 261 | 283 | - | - | |
Bda01g01802 | 467 | SMART | PGNneu | 177 | 244 | - | - | |
Bda01g01802 | 467 | Pfam | UBX domain | 354 | 434 | IPR001012 | GO:0005515 | |
Bda01g01802 | 467 | ProSiteProfiles | UBX domain profile. | 353 | 438 | IPR001012 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01305 | Bda-Chr1:48489624 | Bda01g01802 | Bda-Chr1:54239173 | 2.89E-07 | dispersed | |
Bda01g01802 | Bda-Chr1:54239173 | Bda13g00486 | Bda-Chr13:5748951 | 2.25E-09 | dispersed | |
Bda01g01802 | Bda-Chr1:54239173 | Bda11g00346 | Bda-Chr11:3865693 | 5.02E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15472 | PF00789 | UBX | 2.70E-06 | CL0072 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01802 | K14011 | - | zju:107429276 | 609.757 |