Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01802 ATGGGTGACATGAAGGATAAGGTCAAGGGTTTCATGAAAAAGGTTAACGATCAGTTCTCGTCGTCTTCTTCTGGGAAATTCAAAGGGCAAGGTCGAGTTTTAGGCTCGTCTTCATCCGAATCCGCTAATCCTGTTTATTACCGATCGGAGCAGAATCTCAATTCGAAGCCTACTATACCTGCTCCTCCCGTGAGTTCTAAACCTTCGTCTGAAAAACCTCTCATTCCAACTAAGAATAAATCATTATTAGCGAATAACTCGAATTCAGATCTTAAGCCGGTTAATGGGTTTGACCCATTTGACTCGTTGATCACTTCTGGGAAGAGATCACAAAATGGGTATTCGATTGATGTGTATGAATGTCCCATTTGTGGGAAATCTTACAGGTCTGAAGAAGAAGTGTCTATGCATGTGGATAGCTGTGTCGATAATTCAGTTGAAAATAACGGGGAAAGTGGAGCTTCTGGATTGCCCAATAACGACGCTGAGGCTTGCGTTGCTAATTTCTTATCAGCGAAGCCGACAGAAGGCTCCATTGAAGTTCTTTTGAAGCTTGTGAGAAACATAGTGAGGGAGCCAGAGAATTCGAAGTTTAGGAGGATTAGGATGAGTAATCCGAAGATTCGGGAGGCAGTTGGTGATGTCGTAGGTGGGATTGAATTGTTGGAATTAGTCGGGTTTGAACTGACAGAGGAGGATGGCGAGATGTGGGCTGCTATGGAGGTTCCAACTGAAGAAAGAATAAGATTAATAAATGAAGTAATAGCTTTACTTGAACGGCCAAAGCAAGAATCACAACAGAAGAAACCTGACCCGCCATCCATGGCTGCAGCTCCTGCTGATGAACTGATTCAGCCGAAAAAGGTTGACAGGCAGACACGAGTATTCTTTTCCGTCCCGGAAAGTGTAGCGGCGAAAATAGAGATACCTGATTCATTCTATAACCTCTCACTTCAAGAGTTGAAAAGAGAGGCCGATTTGAGGAAGAAAAAGATGGAGTCGTCCCAACTTTTGATCCCCAAATCATACAAGGAAAAGCAGGCAAACGCAGTTCGAAGAAGATACAAAAAAACTATGATTAGGATTCAGTTTCCTGATGGAGTGGTTCTCCAAGGCGTCTTTGCTCCTTGGGAGTCAACTACTGCCTTGTATGAGTTTGTAAGGTCTGCACTAAAAGAACCCGGCCTGCAGTTTGAGCTGTTACATCCCGTCGTTGTCAGACGCAGAGTTATCCCTCGACGCCCCGTCGAAGCGAGCGAGAAGGTGATTACTTTAGAAGAAGAGGATTTGGTCCCATCGGCTCTTATCAAGTTCAGACCAATTGAGACAGAATCGATCGTCTTCACTGGTTTATGCAACGACCTCCTAGAAATGATTGAACCGGTCCCAAATGGCTCTGCATAA 1404 44.37 MGDMKDKVKGFMKKVNDQFSSSSSGKFKGQGRVLGSSSSESANPVYYRSEQNLNSKPTIPAPPVSSKPSSEKPLIPTKNKSLLANNSNSDLKPVNGFDPFDSLITSGKRSQNGYSIDVYECPICGKSYRSEEEVSMHVDSCVDNSVENNGESGASGLPNNDAEACVANFLSAKPTEGSIEVLLKLVRNIVREPENSKFRRIRMSNPKIREAVGDVVGGIELLELVGFELTEEDGEMWAAMEVPTEERIRLINEVIALLERPKQESQQKKPDPPSMAAAPADELIQPKKVDRQTRVFFSVPESVAAKIEIPDSFYNLSLQELKREADLRKKKMESSQLLIPKSYKEKQANAVRRRYKKTMIRIQFPDGVVLQGVFAPWESTTALYEFVRSALKEPGLQFELLHPVVVRRRVIPRRPVEASEKVITLEEEDLVPSALIKFRPIETESIVFTGLCNDLLEMIEPVPNGSA 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54239173 54241722 + Bda004093.2 Bda01g01802 1802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01802 467 SUPERFAMILY Ubiquitin-like 328 438 IPR029071 -
Bda01g01802 467 MobiDBLite consensus disorder prediction 15 60 - -
Bda01g01802 467 MobiDBLite consensus disorder prediction 70 87 - -
Bda01g01802 467 Gene3D - 168 260 - -
Bda01g01802 467 MobiDBLite consensus disorder prediction 1 87 - -
Bda01g01802 467 Pfam PUB domain 175 248 IPR018997 -
Bda01g01802 467 CDD PUB 164 260 - -
Bda01g01802 467 Gene3D - 347 440 - -
Bda01g01802 467 SUPERFAMILY PUG domain-like 172 258 IPR036339 -
Bda01g01802 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 464 - -
Bda01g01802 467 MobiDBLite consensus disorder prediction 261 283 - -
Bda01g01802 467 SMART PGNneu 177 244 - -
Bda01g01802 467 Pfam UBX domain 354 434 IPR001012 GO:0005515
Bda01g01802 467 ProSiteProfiles UBX domain profile. 353 438 IPR001012 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01305 Bda-Chr1:48489624 Bda01g01802 Bda-Chr1:54239173 2.89E-07 dispersed
Bda01g01802 Bda-Chr1:54239173 Bda13g00486 Bda-Chr13:5748951 2.25E-09 dispersed
Bda01g01802 Bda-Chr1:54239173 Bda11g00346 Bda-Chr11:3865693 5.02E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15472 PF00789 UBX 2.70E-06 CL0072 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01802 K14011 - zju:107429276 609.757