Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g01821 | ATGGAAGCGATTATCGGACTTCTACGCATTCGGGTGGTGCGAGGCGTCAACCTCGCCGCCCGCGATTCTCGCAGCAGCGACCCCTATGCCACCATCACCACTGAAATTATGCAGACCTTGAAGACTCGTGTTGTGAAAAATGATTGCAATCCCGAGTGGAACGATGAACTGACACTCCCCATCTCGCATCTTGATGCTCCAATTATTCTCGTAAGCATATCCCTCTTCACTTTTTACGAATCGTTTATCGTCGGCAAACTGCTAATAAGTCAATTAAAATTTGTGCAGAAAGTCTATGATAAAGACACTTTAACTGCAGACGACAAAATGGGCGAAGCCGAGATCGACCTAAAACCATTCATCGAATGTCTGAAAATGGGGTTGGACAACCTTCCAAATGGCTGCGTTTTGAAGAGAGTTTACCCCGATCGAACAAACTGTTTGGCGGAGGAGAGCAGTTGCGTTTGGAACGACGGGAAAGTCGTGCAAAACATGTGCCTACGATTGAAGAACGTTGAGTGTGGTGAAGTGATGATTCAACTCGAGTGGATCGACATTCCGGGTGGAAAGGGTCTGGAAATCGACAAGAGGTCCCGAGACGGTAAATAA | 609 | 47.13 | MEAIIGLLRIRVVRGVNLAARDSRSSDPYATITTEIMQTLKTRVVKNDCNPEWNDELTLPISHLDAPIILVSISLFTFYESFIVGKLLISQLKFVQKVYDKDTLTADDKMGEAEIDLKPFIECLKMGLDNLPNGCVLKRVYPDRTNCLAEESSCVWNDGKVVQNMCLRLKNVECGEVMIQLEWIDIPGGKGLEIDKRSRDGK | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 54362365 | 54364022 | - | Bda004113.1 | Bda01g01821 | 1821 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g01821 | 202 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 72 | - | - | |
| Bda01g01821 | 202 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 72 | IPR044562 | - | |
| Bda01g01821 | 202 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 94 | 190 | - | - | |
| Bda01g01821 | 202 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 185 | IPR035892 | - | |
| Bda01g01821 | 202 | ProSiteProfiles | C2 domain profile. | 1 | 130 | IPR000008 | - | |
| Bda01g01821 | 202 | Gene3D | C2 domain | 3 | 198 | IPR035892 | - | |
| Bda01g01821 | 202 | Pfam | C2 domain | 6 | 73 | IPR000008 | - | |
| Bda01g01821 | 202 | Pfam | C2 domain | 97 | 119 | IPR000008 | - | |
| Bda01g01821 | 202 | SMART | C2_3c | 7 | 129 | IPR000008 | - | |
| Bda01g01821 | 202 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 94 | 190 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01821 | Bda-Chr1:54362365 | Bda14g00936 | Bda-Chr14:7438576 | 6.64E-76 | dispersed | |
| Bda10g01180 | Bda-Chr10:45767572 | Bda01g01821 | Bda-Chr1:54362365 | 1.58E-70 | transposed | |
| Bda01g01821 | Bda-Chr1:54362365 | Bda11g00146 | Bda-Chr11:1912166 | 3.21E-27 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g01821 | - | - | zju:107429323 | 253.062 |