Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01830 | ATGGGGCTTCAGAGCCAGCTCAACGACTTGTCCTCCGTTTCCATTCCTCTTCTTCTGGTCGCCACCCTCGCTACCTGCCTCAACTACCTCCGATCGTCCTTCTCCGATCTTCTCCACTCCGTCCGCCCCTCCCGATTTCACCCCCACCACCACCTTGACGATGGACTCTTCGATGCCGTCGGATCGGGACTCGCCGGACTTATTCAGCTCGCTGAGCAAATAAACCTGAATCGCGATTTGTCCCACCGGTTCGGCGACGAAATCGACGACGCCCTTGGTGGTGGCTCCGATTGCGTGGTTTGCTTGTCTAATTTGAAGGTCGGGGATAGAGTACGGCGGCTTTCCTGCCGCCATGTGTTCCACAAGAAGTGCTTCGACGGCTGGCTTGATCATCTGAACTTTAACTGCCCTCTCTGTCGGTGTCCTTTCGTTTCAGATGAGCGAGCGTCTCACACGCGCCTTCATGTCGGTGAAGATGTCGTTTCCTGGCTGTCGATGCGGTGA | 504 | 56.35 | MGLQSQLNDLSSVSIPLLLVATLATCLNYLRSSFSDLLHSVRPSRFHPHHHLDDGLFDAVGSGLAGLIQLAEQINLNRDLSHRFGDEIDDALGGGSDCVVCLSNLKVGDRVRRLSCRHVFHKKCFDGWLDHLNFNCPLCRCPFVSDERASHTRLHVGEDVVSWLSMR | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54423203 | 54423706 | - | Bda004122.1 | Bda01g01830 | 1830 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01830 | 167 | SMART | ring_2 | 98 | 139 | IPR001841 | - | |
Bda01g01830 | 167 | ProSiteProfiles | Zinc finger RING-type profile. | 98 | 140 | IPR001841 | - | |
Bda01g01830 | 167 | SUPERFAMILY | RING/U-box | 97 | 146 | - | - | |
Bda01g01830 | 167 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 165 | - | - | |
Bda01g01830 | 167 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHA2A | 1 | 165 | - | - | |
Bda01g01830 | 167 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 157 | IPR013083 | - | |
Bda01g01830 | 167 | Pfam | Ring finger domain | 97 | 140 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01830 | Bda-Chr1:54423203 | Bda08g00140 | Bda-Chr8:1319207 | 8.99E-15 | dispersed | |
Bda01g01830 | Bda-Chr1:54423203 | Bda11g00152 | Bda-Chr11:1974447 | 1.61E-93 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01830 | K16282 | - | zju:107413314 | 218.394 |