Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01830 ATGGGGCTTCAGAGCCAGCTCAACGACTTGTCCTCCGTTTCCATTCCTCTTCTTCTGGTCGCCACCCTCGCTACCTGCCTCAACTACCTCCGATCGTCCTTCTCCGATCTTCTCCACTCCGTCCGCCCCTCCCGATTTCACCCCCACCACCACCTTGACGATGGACTCTTCGATGCCGTCGGATCGGGACTCGCCGGACTTATTCAGCTCGCTGAGCAAATAAACCTGAATCGCGATTTGTCCCACCGGTTCGGCGACGAAATCGACGACGCCCTTGGTGGTGGCTCCGATTGCGTGGTTTGCTTGTCTAATTTGAAGGTCGGGGATAGAGTACGGCGGCTTTCCTGCCGCCATGTGTTCCACAAGAAGTGCTTCGACGGCTGGCTTGATCATCTGAACTTTAACTGCCCTCTCTGTCGGTGTCCTTTCGTTTCAGATGAGCGAGCGTCTCACACGCGCCTTCATGTCGGTGAAGATGTCGTTTCCTGGCTGTCGATGCGGTGA 504 56.35 MGLQSQLNDLSSVSIPLLLVATLATCLNYLRSSFSDLLHSVRPSRFHPHHHLDDGLFDAVGSGLAGLIQLAEQINLNRDLSHRFGDEIDDALGGGSDCVVCLSNLKVGDRVRRLSCRHVFHKKCFDGWLDHLNFNCPLCRCPFVSDERASHTRLHVGEDVVSWLSMR 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54423203 54423706 - Bda004122.1 Bda01g01830 1830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01830 167 SMART ring_2 98 139 IPR001841 -
Bda01g01830 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Bda01g01830 167 SUPERFAMILY RING/U-box 97 146 - -
Bda01g01830 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Bda01g01830 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 165 - -
Bda01g01830 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 157 IPR013083 -
Bda01g01830 167 Pfam Ring finger domain 97 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01830 Bda-Chr1:54423203 Bda08g00140 Bda-Chr8:1319207 8.99E-15 dispersed
Bda01g01830 Bda-Chr1:54423203 Bda11g00152 Bda-Chr11:1974447 1.61E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01830 K16282 - zju:107413314 218.394