Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01850 ATGGTCCAATCAAAGAAGTTCAGAGGAGTCTGGCAGAGACACTGGGGATCATGGGTATCAGAAATTCGCCATCCCTTGCTGAAGAGAAGGGTCTGGCTAGGAACTTTCGAGACTGCAGAAGAAGCAGCCAGAGCTTACGATGAAGCAGCAATTTTGATGAATGGAAGAAACGCGAAAACAAATTTTCCAGTCTCTCGAGCTCCGACCAGCGACTCAGAAAAAAACAAGCTTTCTCCGTTATCGCCCAAGAGTTTGTCAGAAATTCTCCATGCAAAGCTGAGAAAGTGTAGCAAAACACCTTCTCCTTCAATAACTTGTCTGAGGTTAGACAACGAAAATTCTCATATCGGAGTTTGGCAAAAGCGAGCTGGGCAGAGTTCGAGCTCAAACTCCAATTGGGTTATGACCGTCGAGCTCGGAAAGAAGAACCCTGAACAGATTTCTTCATCTCCAGACCAGCTTCCGCCATTGGAGGCTATCCCCGAGCTTCCGCTAGAGATGAGTGAAGAAGAAAGAGTTGCTTTGCAAATGATCGAGGAATTGCTCATTGGAAACAATCCAAGCCCTTCAATTCAGTGTCATGAAGAAGACTCAGGTCCTTATTTCTCCATTTGA 615 45.69 MVQSKKFRGVWQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMNGRNAKTNFPVSRAPTSDSEKNKLSPLSPKSLSEILHAKLRKCSKTPSPSITCLRLDNENSHIGVWQKRAGQSSSSNSNWVMTVELGKKNPEQISSSPDQLPPLEAIPELPLEMSEEERVALQMIEELLIGNNPSPSIQCHEEDSGPYFSI 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54597473 54598196 + Bda004143.1 Bda01g01850 1850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01850 204 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 193 - -
Bda01g01850 204 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bda01g01850 204 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Bda01g01850 204 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bda01g01850 204 MobiDBLite consensus disorder prediction 61 80 - -
Bda01g01850 204 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bda01g01850 204 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bda01g01850 204 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bda01g01850 204 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Bda01g01850 204 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Bda01g01850 204 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01850 Bda-Chr1:54597473 Bda11g00143 Bda-Chr11:1883290 3.11E-113 dispersed
Bda01g01850 Bda-Chr1:54597473 Bda01g01833 Bda-Chr1:54446778 1.50E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15477 PF00847 AP2 1.30E-12 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01850 - - qsu:112002896 261.151