Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01850 | ATGGTCCAATCAAAGAAGTTCAGAGGAGTCTGGCAGAGACACTGGGGATCATGGGTATCAGAAATTCGCCATCCCTTGCTGAAGAGAAGGGTCTGGCTAGGAACTTTCGAGACTGCAGAAGAAGCAGCCAGAGCTTACGATGAAGCAGCAATTTTGATGAATGGAAGAAACGCGAAAACAAATTTTCCAGTCTCTCGAGCTCCGACCAGCGACTCAGAAAAAAACAAGCTTTCTCCGTTATCGCCCAAGAGTTTGTCAGAAATTCTCCATGCAAAGCTGAGAAAGTGTAGCAAAACACCTTCTCCTTCAATAACTTGTCTGAGGTTAGACAACGAAAATTCTCATATCGGAGTTTGGCAAAAGCGAGCTGGGCAGAGTTCGAGCTCAAACTCCAATTGGGTTATGACCGTCGAGCTCGGAAAGAAGAACCCTGAACAGATTTCTTCATCTCCAGACCAGCTTCCGCCATTGGAGGCTATCCCCGAGCTTCCGCTAGAGATGAGTGAAGAAGAAAGAGTTGCTTTGCAAATGATCGAGGAATTGCTCATTGGAAACAATCCAAGCCCTTCAATTCAGTGTCATGAAGAAGACTCAGGTCCTTATTTCTCCATTTGA | 615 | 45.69 | MVQSKKFRGVWQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMNGRNAKTNFPVSRAPTSDSEKNKLSPLSPKSLSEILHAKLRKCSKTPSPSITCLRLDNENSHIGVWQKRAGQSSSSNSNWVMTVELGKKNPEQISSSPDQLPPLEAIPELPLEMSEEERVALQMIEELLIGNNPSPSIQCHEEDSGPYFSI | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54597473 | 54598196 | + | Bda004143.1 | Bda01g01850 | 1850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01850 | 204 | PANTHER | AP2-EREBP TRANSCRIPTION FACTOR | 1 | 193 | - | - | |
Bda01g01850 | 204 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Bda01g01850 | 204 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Bda01g01850 | 204 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Bda01g01850 | 204 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 193 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01850 | Bda-Chr1:54597473 | Bda11g00143 | Bda-Chr11:1883290 | 3.11E-113 | dispersed | |
Bda01g01850 | Bda-Chr1:54597473 | Bda01g01833 | Bda-Chr1:54446778 | 1.50E-150 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15477 | PF00847 | AP2 | 1.30E-12 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01850 | - | - | qsu:112002896 | 261.151 |