Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01858 ATGTTGGTTGAGATATTGCCGGTTAAGTATGGTGGGTCGGGTCCAAAGAAATCGAAAAGAGAAGGCGATGACAACGGGTTAAGGAAGGTGGAGGCTAGAAAATCAGTCTCTCACGTTGAAACGAATTTGAATTCAGTGGCTTCGTTTCTGCAAATGAAAGTGTTGGCTTGTGATATGCCTGAGTTCGTGCAGATTCATGCTTTCAGGTGCGCGAGAAGAACTTTTGATAGTTTGGAGAAGTTTAGTGGAAAACACATGGCTTATAACATGAAAAAGGAGTTTGACAAAGTATATGGACCAGCGTGGCACTGCATCGTGGGCTCCAATTTCGGTTCGTTCGTGACCCATTCCACAGGCTGCTTCATTTATTTTTCCATGGAGAAATTATATATTTTATTATTCAAAACACAAATACAGAAAGCTGTTGAATATATTATCTAG 441 40.59 MLVEILPVKYGGSGPKKSKREGDDNGLRKVEARKSVSHVETNLNSVASFLQMKVLACDMPEFVQIHAFRCARRTFDSLEKFSGKHMAYNMKKEFDKVYGPAWHCIVGSNFGSFVTHSTGCFIYFSMEKLYILLFKTQIQKAVEYII 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54697844 54698927 + Bda004152.1 Bda01g01858 1858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01858 146 Pfam Dynein light chain type 1 52 136 IPR001372 GO:0007017|GO:0030286
Bda01g01858 146 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 50 136 IPR037177 GO:0007017|GO:0030286
Bda01g01858 146 PANTHER DYNEIN LIGHT CHAIN-LIKE PROTEIN 18 142 - -
Bda01g01858 146 SMART Dynein_light_2 47 136 IPR001372 GO:0007017|GO:0030286
Bda01g01858 146 PANTHER DYNEIN LIGHT CHAIN 18 142 IPR001372 GO:0007017|GO:0030286
Bda01g01858 146 SUPERFAMILY DLC 48 136 IPR037177 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01858 K10418 DYNLL; dynein light chain LC8-type - zju:107403987 216.083
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01858 Bda11g00136 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01858 Bda-Chr1:54697844 Bda15g00590 Bda-Chr15:9098692 3.29E-42 dispersed
Bda15g00582 Bda-Chr15:9043306 Bda01g01858 Bda-Chr1:54697844 7.96E-10 dispersed
Bda01g01858 Bda-Chr1:54697844 Bda11g00179 Bda-Chr11:2280181 3.29E-30 wgd
Bda01g01858 Bda-Chr1:54697844 Bda11g00136 Bda-Chr11:1844798 6.98E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
Vvi11g442 Blo01g00625 . Bda01g01858 Bda11g00136 . . . . . . Cma05g01304 Cma12g01218 Car05g01222 Car12g01192 . . . . . . . . . . Cla11g00265 . Cec11g0299 Cco11g0309 Clacu11g0427 Cmu11g0278 Cre11g0775 Cone2ag0253 Cone16ag0789 Cone4ag0682 . . Csa02g00176 Chy05g01328 . . . . . . . Bma01g00428 . . . Cmo12g01246 . . . . Cpe11g01080 Cpe07g01091 . . . . . . . . . . . . . . Lsi11g00304 . . Cme05g01932
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006880 2 1 1 2 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01858 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 1.00811 0.0 0.0 2.895978 1.87439