Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01862 ATGGCTACCATATCAAGGGAAGATCACTCCGACGACTATGATAGTAGCTGCTCCTCCATCACCGTCCCGGACTCTAGCCGGAGCTGGATGAGCAACCTTAGCTTCGGCAGCCGACGGCTCAGCTCGGCCTCCTGCGATGTTTCTCCTCACAAGCCCCACAAGGCTAACCATGCCGCCTGGGAATCCATGAGATGGCTGAGGGGGGCTGCGGGATGCGTCGGTCTCGACCATTTTCGGCTGCTTCGCCGGCTCGGAAGTGGCGATATAGGAAATGTGTATCTTTGTCAGATAAGAAATCCATTGGTGGGTTTGCCTCAGAGCTTTTATGCCATGAAAGTGGTGGATAGAGAAGCTCTGGCTATAAGGAAGAAATTGAAAAGAGCAGAAATGGAGAAGGAGATTCTTGGTTTGCTAGATCATCCTTTTCTGCCGACTCTTTACGCCGCCTTTGAGGCTTCTCACTACTCTTGTTTGGTTATGGAGTTTTGTCCCGGCGGCGACTTGTACGCCGCCCGGCAACGGCAGTCAGGACGACGGTTTAGCATTTCTTCTGCTAAGTTTTACGCCGCAGAAGTGATCTTAGCCATAGAATATCTGCACATGATGGGAATTGTTTACAGAGATTTAAAGCCTGAAAATGTACTAATCAGAGAAGACGGCCACATAATGTTGTCCGATTTCGATCTCTGTCTCAAATGCGATGTCGTTCCCAGGCTCGTCCGGCCAAAAAGAACAGCCAGTGAAGTCCGGTCCGCCGGTAAAGGCTCCGTCAGAAGTTCTTCTTCTTCTTGCGTCGGTCCGTTAAAGCCAGTCTTGTCTTGCTTCTCAAAACGAACCAAACCAACAAGAACAACAACCATCATCGAGCAGGCTGATCATCTTCTTCCAGAGCCCGAACCAGAGTTAGTAGCGGAGCCAAGTGGGGCCCGCTCGAAATCTTTCGTCGGCACCCACGAATACCTAGCCCCGGAGATCATCTCCGGCGAGGGCCACGGAAGTGCGGTCGATTGGTGGACATTAGGAGTGTTTTTATACGAAATGTTGTACGGAAAAACTCCGTTTAAAGGCGAGAACAACGAGAAAACCCTAGTAAACATTCTGAAGCAGCCATTAACGTTTCCAAGAATAGGAGTAAGTAGCAGCAAAGAGTACGAAGAAATGGTGAAAGTTCAAGATTTGATAATGCAACTGCTGGCGAAGAATCAGAAGAAGAGAATCGGAAGCGTAAAGGGTTCGACAGAAATCAAGAGGCATGAATTTTTCAAAGGAGTTAACTGGGCTTTGATTCGTTCCGTAAAACCACCTGAAATTCCTCGAGATTTGCAGAATATCAGACGGAGAAGCTACGTTCCAAAGCTGAGCAAGAAGGAGAGAGACGAACCTTACCAAATTCCTCACCACCATGTTGATTACTTCTAA 1419 48.56 MATISREDHSDDYDSSCSSITVPDSSRSWMSNLSFGSRRLSSASCDVSPHKPHKANHAAWESMRWLRGAAGCVGLDHFRLLRRLGSGDIGNVYLCQIRNPLVGLPQSFYAMKVVDREALAIRKKLKRAEMEKEILGLLDHPFLPTLYAAFEASHYSCLVMEFCPGGDLYAARQRQSGRRFSISSAKFYAAEVILAIEYLHMMGIVYRDLKPENVLIREDGHIMLSDFDLCLKCDVVPRLVRPKRTASEVRSAGKGSVRSSSSSCVGPLKPVLSCFSKRTKPTRTTTIIEQADHLLPEPEPELVAEPSGARSKSFVGTHEYLAPEIISGEGHGSAVDWWTLGVFLYEMLYGKTPFKGENNEKTLVNILKQPLTFPRIGVSSSKEYEEMVKVQDLIMQLLAKNQKKRIGSVKGSTEIKRHEFFKGVNWALIRSVKPPEIPRDLQNIRRRSYVPKLSKKERDEPYQIPHHHVDYF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54733096 54734711 - Bda004156.1 Bda01g01862 1862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01862 472 Gene3D Transferase(Phosphotransferase) domain 1 309 439 - -
Bda01g01862 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Bda01g01862 472 Coils Coil 111 131 - -
Bda01g01862 472 Gene3D Transferase(Phosphotransferase) domain 1 167 233 - -
Bda01g01862 472 ProSiteProfiles Protein kinase domain profile. 78 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01862 472 CDD STKc_phototropin_like 76 439 - -
Bda01g01862 472 SUPERFAMILY Protein kinase-like (PK-like) 57 443 IPR011009 -
Bda01g01862 472 SMART serkin_6 78 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01862 472 PANTHER FLIPPASE KINASE 1-RELATED 1 472 - -
Bda01g01862 472 Gene3D Phosphorylase Kinase; domain 1 75 166 - -
Bda01g01862 472 Pfam Protein kinase domain 79 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01862 472 Pfam Protein kinase domain 310 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01862 472 PANTHER PROTEIN KINASE PINOID 2 1 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01862 Bda-Chr1:54733096 Bda07g00847 Bda-Chr7:9920701 4.64E-151 dispersed
Bda07g00916 Bda-Chr7:10741313 Bda01g01862 Bda-Chr1:54733096 7.15E-72 dispersed
Bda01g01862 Bda-Chr1:54733096 Bda05g00678 Bda-Chr5:55076302 1.68E-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69462 PF00069 Pkinase 2.50E-32 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01862 K08286 - qsu:112027986 720.309