Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01886 TTGGTGAATATTATGCCGGACGTCCAAGCTCAAGTGAACGATTTCCTTATAAAGCTTAAGAAACGTAAAATTGAGGGTTCGCAGGCCACTGCCAGGCAGACTGCCGAGTTGCTTCGATCATTTATTTCACAGCAGCGACTGCCCTATCTTAATCAAGCTGGAGCTTTGATTGATGCTGTGAAGGCTGTAGGCGAACAACTGATTGCTGCAAATCCTGTCGAGCTTGCTGTAGGCAATATTGTGAGGCGTGTTTTGCACATTATTAGAGAGGAGGATTTATCTCTAGCAACAGCTGCTATTGCTGGGTTGAGTGTGTCAGCCACTAGTGATGATGAAGATGACACCAGGAGAGATGATCACCCAACTCTTTCTGCTGCTGTTGTTGCTGCTGCTGCAAGAAGCACTTTACGTCCCCCTTCCTTGCAGACCCTTCTTGAAGATATTCCTGATGCAGCTGCTCCCCATAACACTTCTTCATCTGGGGGTGATTCCGAAGGAAAAAGCAAATCGGCCGATAAAAGTTCTAGAAGTCGAAAATTAAAGCATGATGTAATTGAAGCTGTTAATGAACTCATTCAAGATATCACAACTTGCCATGAACAAATAGCTGAGCAAGCAGTAGAACACATCCATCAAAATGAAGTTATATTGACTCTTGGAAGTTCCAGAACAGTTCTGGAATTTCTTTGTGCTGCAAAGGAGAAAAAAAGATCTTTTCGGGTTTTTGTTGCAGAGGGTGCTCCAAGGTATCAGGGGCATCTTCTTGCAAAAGAATTATCTTCAAGAGGTTTACAAACAACAGTTATAACTGATTCTGCAGTTTTTGCTATGATCTCTAGGGTGAACATGGTTATAGTTGGAGCACATGCTGTCATGGCCAATGGTGGGGTAATAGCACCTGTTGGGTTAAATATGGTTGCACTTGCTGCTCAAAGGCATGCTGTCCCCTTTGTTGTACTTGCTGGAAGCCACAAGTTGTGCCCATTGTATCCACACAACCCTGAAGTTCTACTCAATGAGCTGCGGTCCCCATCAGAGTTACTGGATTTTGGAGAAATTTCAGACTGCATGGATTTTGGAAGTGACACTGGCTCTCCTCTTCTTCATGTGGTGAATCCAACGTTTGATTATGTGCCACCAAAACTTGTTAGTTTGTTTATTACAGACACAGGGGGCCATAATCCATCATACATGTACCGGCTCATCGGTGACTATTACTCTGCTAAAGATCTAATAGTACTACGAAGAACTTAA 1254 43.38 LVNIMPDVQAQVNDFLIKLKKRKIEGSQATARQTAELLRSFISQQRLPYLNQAGALIDAVKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLATAAIAGLSVSATSDDEDDTRRDDHPTLSAAVVAAAARSTLRPPSLQTLLEDIPDAAAPHNTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDITTCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKELSSRGLQTTVITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEISDCMDFGSDTGSPLLHVVNPTFDYVPPKLVSLFITDTGGHNPSYMYRLIGDYYSAKDLIVLRRT 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55032435 55035878 + Bda004186.1 Bda01g01886 1886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01886 417 Gene3D - 198 405 IPR042529 -
Bda01g01886 417 MobiDBLite consensus disorder prediction 151 180 - -
Bda01g01886 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 58 412 - -
Bda01g01886 417 Pfam Initiation factor 2 subunit family 23 395 IPR000649 GO:0044237
Bda01g01886 417 MobiDBLite consensus disorder prediction 166 180 - -
Bda01g01886 417 SUPERFAMILY NagB/RpiA/CoA transferase-like 8 410 IPR037171 -
Bda01g01886 417 PANTHER BNAA01G32370D PROTEIN 58 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01886 Bda-Chr1:55032435 Bda12g00232 Bda-Chr12:2449035 1.98E-17 dispersed
Bda04g00950 Bda-Chr4:59204092 Bda01g01886 Bda-Chr1:55032435 1.76E-22 transposed
Bda09g01060 Bda-Chr9:40812964 Bda01g01886 Bda-Chr1:55032435 2.09E-14 transposed
Bda09g01261 Bda-Chr9:44244658 Bda01g01886 Bda-Chr1:55032435 2.79E-14 transposed
Bda01g01886 Bda-Chr1:55032435 Bda11g00117 Bda-Chr11:1614800 1.96E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01886 K03754 - zju:107412776 701.049