Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01890 ATGGCCGTCGATCTAGCGGTTTTCCCCCAGATGGAGGATCAAGCGGCGGTGCAAGAAGCAGCGGCCTTAGGATTGAAGAGCATGGAAGAGCTAATCTGTATCTTATCGCATCAAATCAATGAGAGCCGCGTCGATCTCGGCCACCTCAATTGCTCTGAAATCACCGATTTCACCGTTTCTAAATTCAAGCAAGTCATTTCCATCCTTAACCGAACCGGCCACGCTCGCTTCCGCCGCGGACCGACCATTCAACACCATCCCCCTCCCGGCATGGTTCATCTCACAGTTCAACCGGAGAAAGAGCTTCAGACCGATTTTTCATCTGTTTCGCCTCCGATCTCCTCAACGACGTCGTCATTTCCGTCGTCTTTCGCCGGAGACGGCAGCGTTTCAAACGGGAAACGAGGATCTTGTGCGGCTTTACCTCAGGTTCCGGCGCAATCCGCCGGAAAACCACCGCTGTCGTTGGGCAATCGGAAACGGTGCCAGGATCACGCCGTCTTCTATGACGCTCCCGGGAACATTTCATCCTCCTGCCGGTGTCATTGCGCTAAAAAAAGGAAATCGAAGGTTAAAAGGACCGTCAGGGTTCCGGCGATCAGCTCTAGAATCGCCGATATACCGCCAGATGAGTATTCCTGGAGAAAATACGGCCAAAAGCCGATAAAAGGGTCACCGTATCCACGAGGGTATTACAAGTGTAGTAGCGTGAGAGGCTGTCCAGCTAAGAAACACGTAGAGCGAGCCACAGACGATCCAACCATGCTCATAGTAACTTACGAAGCCGAGCATCGTCACCCGCAGGCCCAACTGGGGGAGCCGGTGACAAAAGAGCGTTGA 840 53.33 MAVDLAVFPQMEDQAAVQEAAALGLKSMEELICILSHQINESRVDLGHLNCSEITDFTVSKFKQVISILNRTGHARFRRGPTIQHHPPPGMVHLTVQPEKELQTDFSSVSPPISSTTSSFPSSFAGDGSVSNGKRGSCAALPQVPAQSAGKPPLSLGNRKRCQDHAVFYDAPGNISSSCRCHCAKKRKSKVKRTVRVPAISSRIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPAKKHVERATDDPTMLIVTYEAEHRHPQAQLGEPVTKER 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55054785 55055820 - Bda004190.1 Bda01g01890 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01890 279 MobiDBLite consensus disorder prediction 106 128 - -
Bda01g01890 279 SUPERFAMILY WRKY DNA-binding domain 206 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g01890 279 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 7 105 - -
Bda01g01890 279 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 104 268 - -
Bda01g01890 279 SMART WRKY_cls 208 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01890 279 Pfam Plant zinc cluster domain 159 206 IPR018872 -
Bda01g01890 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 105 IPR044810 GO:0003700
Bda01g01890 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 104 268 IPR044810 GO:0003700
Bda01g01890 279 ProSiteProfiles WRKY domain profile. 203 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01890 279 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01890 279 Gene3D WRKY domain 194 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01890 Bda-Chr1:55054785 Bda04g00267 Bda-Chr4:32616742 1.85E-74 dispersed
Bda01g01890 Bda-Chr1:55054785 Bda01g00700 Bda-Chr1:34258875 2.13E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15482 PF03106 WRKY 1.50E-25 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01890 - - vvi:100251308 318.161