Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01890 | ATGGCCGTCGATCTAGCGGTTTTCCCCCAGATGGAGGATCAAGCGGCGGTGCAAGAAGCAGCGGCCTTAGGATTGAAGAGCATGGAAGAGCTAATCTGTATCTTATCGCATCAAATCAATGAGAGCCGCGTCGATCTCGGCCACCTCAATTGCTCTGAAATCACCGATTTCACCGTTTCTAAATTCAAGCAAGTCATTTCCATCCTTAACCGAACCGGCCACGCTCGCTTCCGCCGCGGACCGACCATTCAACACCATCCCCCTCCCGGCATGGTTCATCTCACAGTTCAACCGGAGAAAGAGCTTCAGACCGATTTTTCATCTGTTTCGCCTCCGATCTCCTCAACGACGTCGTCATTTCCGTCGTCTTTCGCCGGAGACGGCAGCGTTTCAAACGGGAAACGAGGATCTTGTGCGGCTTTACCTCAGGTTCCGGCGCAATCCGCCGGAAAACCACCGCTGTCGTTGGGCAATCGGAAACGGTGCCAGGATCACGCCGTCTTCTATGACGCTCCCGGGAACATTTCATCCTCCTGCCGGTGTCATTGCGCTAAAAAAAGGAAATCGAAGGTTAAAAGGACCGTCAGGGTTCCGGCGATCAGCTCTAGAATCGCCGATATACCGCCAGATGAGTATTCCTGGAGAAAATACGGCCAAAAGCCGATAAAAGGGTCACCGTATCCACGAGGGTATTACAAGTGTAGTAGCGTGAGAGGCTGTCCAGCTAAGAAACACGTAGAGCGAGCCACAGACGATCCAACCATGCTCATAGTAACTTACGAAGCCGAGCATCGTCACCCGCAGGCCCAACTGGGGGAGCCGGTGACAAAAGAGCGTTGA | 840 | 53.33 | MAVDLAVFPQMEDQAAVQEAAALGLKSMEELICILSHQINESRVDLGHLNCSEITDFTVSKFKQVISILNRTGHARFRRGPTIQHHPPPGMVHLTVQPEKELQTDFSSVSPPISSTTSSFPSSFAGDGSVSNGKRGSCAALPQVPAQSAGKPPLSLGNRKRCQDHAVFYDAPGNISSSCRCHCAKKRKSKVKRTVRVPAISSRIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPAKKHVERATDDPTMLIVTYEAEHRHPQAQLGEPVTKER | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55054785 | 55055820 | - | Bda004190.1 | Bda01g01890 | 1890 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01890 | 279 | MobiDBLite | consensus disorder prediction | 106 | 128 | - | - | |
Bda01g01890 | 279 | SUPERFAMILY | WRKY DNA-binding domain | 206 | 268 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bda01g01890 | 279 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 7 | 105 | - | - | |
Bda01g01890 | 279 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 104 | 268 | - | - | |
Bda01g01890 | 279 | SMART | WRKY_cls | 208 | 268 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bda01g01890 | 279 | Pfam | Plant zinc cluster domain | 159 | 206 | IPR018872 | - | |
Bda01g01890 | 279 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 7 | 105 | IPR044810 | GO:0003700 | |
Bda01g01890 | 279 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 104 | 268 | IPR044810 | GO:0003700 | |
Bda01g01890 | 279 | ProSiteProfiles | WRKY domain profile. | 203 | 269 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bda01g01890 | 279 | Pfam | WRKY DNA -binding domain | 210 | 267 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bda01g01890 | 279 | Gene3D | WRKY domain | 194 | 269 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01890 | Bda-Chr1:55054785 | Bda04g00267 | Bda-Chr4:32616742 | 1.85E-74 | dispersed | |
Bda01g01890 | Bda-Chr1:55054785 | Bda01g00700 | Bda-Chr1:34258875 | 2.13E-90 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15482 | PF03106 | WRKY | 1.50E-25 | CL0274 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01890 | - | - | vvi:100251308 | 318.161 |