Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01900 ATGGAAGCCCCAAGAAAAAAGGCTGCCCGCCAAGAATCTAAAAAATCTAATTCTAAAACAGAGTCTGGGAGTGAGTTCATTGAATCATTGAAATTCAGAAGGGGCAGCAAAATATTCAAAAGTGAAAGGAAAAGACCAAGATCCAAAAGCAATGTACATATATTGGATTCAAGCTTGATAGAAAAGGAAGTGGCTAAATCCTTGAACAAGTGGACCAAGAAGAATTCTGAACTGGGTGGTAAAAAAAGTCAGATTAAACAACTGGAAAGGAATTCCTTGAAGAAGTCTAATTTTAGATTCCAGGATAAAAAATCCTGCTTGAGCAAGTCTGAAGGGAAAGAAAACAATGTTGTTGAGGAACAAAAGATGGATAACTTAAAGAAAAGGACGAGGAAAAAGAGGCAAACATGCAATGCAGAGCAAGACGAAGCTTGTCGCTTGCAGAGAAGAACTAGGTATCTAATGATCAAAATGAAGTTGGAACAGAACCTCATTGACGCCTACTCTGGTGAAGGCTGGAAAGGCCAAAGTCGAGAAAAGATTAAGCCTGAAAATGAATTACAAAGAGCAAGAAAGCAGATTTTGAAATGCAAACTTGGAATTCGAGATGCAGTTCAGCAGCTAGATTCACTGAGTTCAGTTGGATGTATTGAAGACTCCGTTATTGGTCCAGATGGATCCGTTTACCATGAACATATAATTTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGATAATGATATTATACTTTGTGATGGAACATGCAACTGCGCTTTCCACCAGAAATGTCTAGACCCACCTTTGGACACTAAACACATTCCTCCAGGAGACCAGGGATGGTTTTGTAAATTTTGTGAGTGTAAGATGGAAATACTAGAGGCAATGAATGCACATCTTGGTACCCAGTTCCCTATGGATAGTCGTTGGGAGGATATTTTCAAGGAAGATGCTGCTTTTCGTGATGGTGGAAATTCACTATTCAATCAAGAAGAAGACTGGCCATCTGATGATTCAGAAGATGATGATTATGATCCAGAGAGAAGGGAAAAGAGCTACCGCGTTGATGAGATAGACAATAATGACAATTCTTCAGAACTCTTGAGCAGCTCTACAAGCTTGAGTTGGTCATTAGATGGTGAAGTCTTTTCCGGAAAGGATGACATTGACTATGAAAATTTCTCTGTTCGTAGCCCTATAGATTCTGATGAGTTCATTGAAGGCGAAGTTATTAGCGGGCGGAGACAGCGACATTCTGTTGATTATAGGAAGTTATATGATGAAATGTTTGGAAAGGAAGCTTCAATGTATGAACAAGCAAGTGAAGATGAAGATTGGGGTCCTGCAAAAAGAAAGAGGAGAGAGAAAGAGTCTGATGCAGCAAGCACCCTTATTACTCTTTATGAAAGTGAGCGAAAGACTCCAGCTCTAGGCACAGAAGTGAAAGATAAACTTCAAAACAAGACATCTTTCAGAATTCCTCGTCAGGCGGTTCAGAAGCTTCGCCAAGTATTTGGAGAGAATGAACTTCCATCTAAAGCTGTCAAACAAAATCTTTCAGAAGAATTGGGCATCGATCCTGAGAAGGTCAACAAATGGTTCAAGAATGCACGATATGTTGCACTTAAGGCAAGAAAGGCAGAGGGAACAAAACCTTTACTATCTCCTAGTAAGTTCAAGGAATTTAATGTTGAAGCAGTGCAGAAAGATGATGGCGATAAATTGGCATCAAACAATGCTATGAAAGATTGCTGGAGAAAGATGTCGAAGGCGACATCCAACCCTTCAAATAAAAAGAAGCACAAGAGAATCCTGCTTAGACCTTGCACCACTAACAAGGATGATGATTTGGAGATTGGTGAAGATGATGAGAGCTTGAAGAAGCTCTTAGAAGAAAGGATGAAGGAGAAGAAGAAGAAGAAGAAGAAAGGGAAGAAGAAGGGGAGAGGAAGAGGAGGTGGATACGAAGAGGCAGAAAAAGAGATGGAAAGAGTGTGTAAAATTAAGAGTAGATTAGAAAATATGAAGCAGGTTTTAGTCAGATTTACAAAAACCAAAAAACCCAAGAACTCACATAAATCAACTCTGTTTCAACACTCTACTGTTTATGTGCCTGTTGCTCAGTTGAAGGAGAAAACTTGA 2142 39.54 MEAPRKKAARQESKKSNSKTESGSEFIESLKFRRGSKIFKSERKRPRSKSNVHILDSSLIEKEVAKSLNKWTKKNSELGGKKSQIKQLERNSLKKSNFRFQDKKSCLSKSEGKENNVVEEQKMDNLKKRTRKKRQTCNAEQDEACRLQRRTRYLMIKMKLEQNLIDAYSGEGWKGQSREKIKPENELQRARKQILKCKLGIRDAVQQLDSLSSVGCIEDSVIGPDGSVYHEHIICAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKHIPPGDQGWFCKFCECKMEILEAMNAHLGTQFPMDSRWEDIFKEDAAFRDGGNSLFNQEEDWPSDDSEDDDYDPERREKSYRVDEIDNNDNSSELLSSSTSLSWSLDGEVFSGKDDIDYENFSVRSPIDSDEFIEGEVISGRRQRHSVDYRKLYDEMFGKEASMYEQASEDEDWGPAKRKRREKESDAASTLITLYESERKTPALGTEVKDKLQNKTSFRIPRQAVQKLRQVFGENELPSKAVKQNLSEELGIDPEKVNKWFKNARYVALKARKAEGTKPLLSPSKFKEFNVEAVQKDDGDKLASNNAMKDCWRKMSKATSNPSNKKKHKRILLRPCTTNKDDDLEIGEDDESLKKLLEERMKEKKKKKKKGKKKGRGRGGGYEEAEKEMERVCKIKSRLENMKQVLVRFTKTKKPKNSHKSTLFQHSTVYVPVAQLKEKT 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55153904 55158853 + Bda004200.1 Bda01g01900 1900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01900 713 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 4 684 - -
Bda01g01900 713 CDD PHD_PRHA_like 235 286 IPR045876 -
Bda01g01900 713 SMART HOX_1 486 548 IPR001356 GO:0003677
Bda01g01900 713 MobiDBLite consensus disorder prediction 345 361 - -
Bda01g01900 713 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Bda01g01900 713 Coils Coil 109 143 - -
Bda01g01900 713 ProSiteProfiles 'Homeobox' domain profile. 484 544 IPR001356 GO:0003677
Bda01g01900 713 MobiDBLite consensus disorder prediction 436 459 - -
Bda01g01900 713 MobiDBLite consensus disorder prediction 634 649 - -
Bda01g01900 713 Gene3D - 487 550 - -
Bda01g01900 713 MobiDBLite consensus disorder prediction 325 370 - -
Bda01g01900 713 PANTHER POLYCOMB PROTEIN PCL 4 684 - -
Bda01g01900 713 CDD homeodomain 488 539 IPR001356 GO:0003677
Bda01g01900 713 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Bda01g01900 713 SUPERFAMILY Homeodomain-like 485 544 IPR009057 -
Bda01g01900 713 SUPERFAMILY FYVE/PHD zinc finger 225 292 IPR011011 -
Bda01g01900 713 Coils Coil 655 675 - -
Bda01g01900 713 MobiDBLite consensus disorder prediction 1 26 - -
Bda01g01900 713 SMART PHD_3 234 287 IPR001965 -
Bda01g01900 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Bda01g01900 713 Coils Coil 627 647 - -
Bda01g01900 713 MobiDBLite consensus disorder prediction 634 660 - -
Bda01g01900 713 Pfam Homeodomain 495 538 IPR001356 GO:0003677
Bda01g01900 713 Pfam PHD-finger 234 289 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01900 Bda-Chr1:55153904 Bda08g00666 Bda-Chr8:6956748 1.76E-47 transposed
Bda01g01900 Bda-Chr1:55153904 Bda06g01216 Bda-Chr6:42099996 1.28E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15484 PF00628 PHD 3.40E-09 CL0390 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01900 - - qlo:115986711 750.355