Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01922 CCATCCAACCAAACACCAATGGGTTCCCTGTCCAACCAGCATGAATTCATTTTCCGGTCGAAACTCCCCGATATTTACATCCCCAACCATCTTCCTCTCCACTCTTACTGCTTCGAAAACATATCCGAGTTTGAAGATCGCCCATGTTTGATCAATGGCGCCACCGGCGAGATATTTACGTACGCCTCCGTCGAGCTGACTTCCAGGAAAGTCGCCGCCGGACTGAGCAAGGTCGGGGTCGGAAAGGGTGACGTCATAATGCTTATGCTCCAAAACAGCTCGGAATTCGTGTTTGCTTTTCTCGGGGCTTCTCATCTGGGAGCAATAAGTACGACGGCGAACCCGTTCTACACTCCGGCGGAGGTGACGAAGCAGGCGAAATCGGCGGCCGTGAAGCTGATCATTACCCAGTCAGCGTACGTAGAAAAAGTAAGGGATTTCGCGAAGGAAAATGGCGTTAAGTTGATGTGTATAGACTCGCCGCCGGACGGGGTCATGCATTTTTCGGAGCTGACTCAGGCGGACGAGAGAGACATTCCGGCGGTGAAAATCAACGCAGACGACGTCGTTGCGTTGCCTTATTCGTCCGGAACGACAGGACTTCCTAAAGGAGTAATGCTTACCCACAGAGGACTCGTCACTAGCGTTGCTCAACAGGTTGACGGAGAAAACCCTAACTTGTACTTTCACAAAAATGATGTGATACTCTGTACACTACCAATGTTTCACATCTACTCTCTGAACTCCGTTCTGCTCTGTGCTCTCCGAGTAGGAGCCGCCATTTTAATCGTTCAGAAGTACGACATCAAAGGTTTGCTTGAGCTTGTTGAGAAATATAAGGTGACGATAGCTCCGTTGGTCCCTCCGATTGTGCTAGACATAGCAAAGAGCGCAGAAATCGATAAATACGATTTGTCGACGATAAGAATTGTGATGTCCGGCGCTGCTCCGATGGGGAAGGAGCTTGAAGACACTGTCAGTGCTAAGCTTCCTAATGCCAAGCTAGGCCAGGGGTATGGAATGACAGAGGCTGGGCCAGTGCTATCAATGTGCTTGGCCTTTGCGAAGGAACCGTTCGAGATCAAATCAGGTGCGTGCGGGACCGTGGTAAGAAATGCTGAGATGAAGATCATTGACCCTGAAACTGGACTCTCTCTTCCAAAGAATCAATCAGGAGAGATCTGCATCAGAGGCAGCCAGATCATGAAAGCAGGTTACTTGAACGACGGGGAGGCCACGAAGAGAACCATCGACGGCGACGGGTGGCTCCACACCGGCGACGTGGGATACATTGATGATGACGATGAGGTTTTTATAGTGGACCGGCTGAAAGAGTTGATCAAGTACAAAGGGTTTCAGGTTGCCCCGGCTGAGCTCGAGGCCTTGCTGGCTGCTCATCCTAAGATATCTGCTGCTGCTGTTGTATCCATGAAAGATGAGACTGCGGGAGAGATTCCAGTTGCTTTTGTCGTTAAATCAAATGGTTGGAAGATCAGTGAGGATGATATCAAGAAGTACATCTCAGATCAGGTTAGTCTAGTTTTGTTCTTGGTAAAAGCATTGGCGCAGGTGGTGTTCTACAAGAGAATAAGAAGAGTGTTCTTTGTGGAGTCGATTCCAATAGCTCCATCAGGGAAGATCTTGAGAAAGAATTTAAGAGCAAGGCTTGCAGAGATGGAGGCCTAA 1686 49.29 PSNQTPMGSLSNQHEFIFRSKLPDIYIPNHLPLHSYCFENISEFEDRPCLINGATGEIFTYASVELTSRKVAAGLSKVGVGKGDVIMLMLQNSSEFVFAFLGASHLGAISTTANPFYTPAEVTKQAKSAAVKLIITQSAYVEKVRDFAKENGVKLMCIDSPPDGVMHFSELTQADERDIPAVKINADDVVALPYSSGTTGLPKGVMLTHRGLVTSVAQQVDGENPNLYFHKNDVILCTLPMFHIYSLNSVLLCALRVGAAILIVQKYDIKGLLELVEKYKVTIAPLVPPIVLDIAKSAEIDKYDLSTIRIVMSGAAPMGKELEDTVSAKLPNAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIIDPETGLSLPKNQSGEICIRGSQIMKAGYLNDGEATKRTIDGDGWLHTGDVGYIDDDDEVFIVDRLKELIKYKGFQVAPAELEALLAAHPKISAAAVVSMKDETAGEIPVAFVVKSNGWKISEDDIKKYISDQVSLVLFLVKALAQVVFYKRIRRVFFVESIPIAPSGKILRKNLRARLAEMEA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55391381 55393928 + Bda004223.1 Bda01g01922 1922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01922 561 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Bda01g01922 561 CDD 4CL 27 552 - -
Bda01g01922 561 Coils Coil 549 561 - -
Bda01g01922 561 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 11 557 - -
Bda01g01922 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 557 - -
Bda01g01922 561 Pfam AMP-binding enzyme 39 449 IPR000873 -
Bda01g01922 561 Gene3D - 9 443 IPR042099 -
Bda01g01922 561 Gene3D - 444 559 IPR045851 -
Bda01g01922 561 SUPERFAMILY Acetyl-CoA synthetase-like 12 559 - -
Bda01g01922 561 Pfam AMP-binding enzyme C-terminal domain 458 546 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01922 Bda-Chr1:55391381 Bda02g00282 Bda-Chr2:41425929 0 dispersed
Bda01g01922 Bda-Chr1:55391381 Bda01g01926 Bda-Chr1:55508683 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01922 K01904 - qsu:111992978 860.136