Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01934 ATGGAGAAAGGTCGTATTTCGGACTACCAACTGAAACTAAACTGGGTAGCCAAAGTGGGGGTCTGTAAAATTTACTTCTTAGTAGCATCAACGGCAATCGAGGACAGTTCCATTGATTTTGGAGACTTTTTCAAAGGTCCATTGCCTGGCAAATTTCTCAAGCTATTGGGGTATTTAGCGTTATCCAGGCTTGGAATATATGTACCTCTTGGTGGGGTAAATAGAGAGGCTTTTGTGGGAAATTTGGATCAGAACAGTTTATTGAGCACGTTGGATTCATTTTCTGGAGGGGGAATTGGAAGATTAGGAGTATGCTCACTTGGTATTGTTCCTTTCATTAATGCTTCGATTGTCTTCCAACTTCTGGCTCAGATCTATCCGAAGTTGCAGGAGCTTCAGAAAAGAGAAGGAGAAGCTGGAAGGAAAAAGATTCTTCAGTACACTCGATATGCTTCAGTTGGATTCGCCATTGTACAAGCAATTGGTCAAGTACTATTTCTCCGCCCCTATGCCAATGACTTCAGTACACAGTGGGTTCTGTCCTCAGTCATTTTACTGACACTTGGCTCTGTTTTAACGACATATATTGGAGAACGAATCACAGACTTGAAACTCGGAAATGGCACGTCACTTTTAATTTTCACGAGCATTATCTCCTACTTACCAGCATCTTTTGGTCGGACAACAGCACAGGCATTTCAGGATGGTAACTACATTGGACTTCTTGCCATTCTTGCATCCTTTTTTCTGTTGGTTCTTGGTATTGTTTATGTTCAGGAAGCAGAAAGGAAAATTCCTATTAACTATGCATCAAGATATACTAGTAGAACTGGAGGGCTTGAAAGGTCTGCTTATCTACCCTTCAAGGTGAATAGCTCTGGAGTTATGCCTATCATATTTTCGACGTCGTCATTAGCACTACCGGGTACACTAGCACGTTTCACAGGCTTAGCTGCGCTAAAGAAGGCAGCAATTTCTTTAAATCCCGGGGGTTCTCTTTATCTCCCCACCAACATTCTTCTGATAGCCTTCTTCAACTACTACTACACTTTCCTCCAGCTGGACCCCGATGATGTGAGTGAACAGTTGAAGCGCCAAGGTGCTTCAATTCCACTTGTCCGCCCCGGTAAAAGCACCGCTGCATTCATTAAAACGGTCCTAAGTCGAATATCAGTTCTTGGATCAGCCTTCTTGGCAATTCTTGCTGCTGGGCCCGCTGTGATTGAGCAAACTACACATCTCACTGCATTTCGAGGTTTCGCAGGCACTTCTGTTCTCATCCTTGTCGGTTGTGCTACTGACACTGCAAGGAAAGTGCAGGCTGAGATAATATCCCAGAAGTACAAGAACATCGAGCTATACGACTTCGATAAATACGGCTCCTAA 1386 43.58 MEKGRISDYQLKLNWVAKVGVCKIYFLVASTAIEDSSIDFGDFFKGPLPGKFLKLLGYLALSRLGIYVPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINASIVFQLLAQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYANDFSTQWVLSSVILLTLGSVLTTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTTAQAFQDGNYIGLLAILASFFLLVLGIVYVQEAERKIPINYASRYTSRTGGLERSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLAALKKAAISLNPGGSLYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTAAFIKTVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIELYDFDKYGS 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55646722 55651255 + Bda032987 Bda01g01934 1934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01934 461 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 29 457 IPR002208 GO:0015031|GO:0016020
Bda01g01934 461 Gene3D SecY subunit domain 43 448 IPR023201 -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 144 167 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 202 225 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 102 122 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 176 201 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 387 405 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 332 354 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 52 70 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 293 312 - -
Bda01g01934 461 PRINTS Preprotein translocase SecY subunit signature 421 439 - -
Bda01g01934 461 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 29 457 - -
Bda01g01934 461 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 51 448 IPR002208 GO:0015031|GO:0016020
Bda01g01934 461 PIRSF SecY_Sec61alpha 26 460 IPR002208 GO:0015031|GO:0016020
Bda01g01934 461 ProSitePatterns Protein secY signature 2. 195 212 IPR030659 -
Bda01g01934 461 Pfam SecY 104 435 IPR002208 GO:0015031|GO:0016020
Bda01g01934 461 SUPERFAMILY Preprotein translocase SecY subunit 44 442 IPR023201 -
Bda01g01934 461 Hamap Protein translocase subunit SecY [secY]. 40 452 IPR026593 -
Bda01g01934 461 ProSitePatterns Protein secY signature 1. 103 122 IPR030659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01934 Bda-Chr1:55646722 Bda04g01161 Bda-Chr4:62311321 9.51E-73 dispersed
Bda01g01934 Bda-Chr1:55646722 Bda13g00955 Bda-Chr13:11237114 2.32E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01934 K10956 - csin:114311491 775.778