Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01945 ATGCAGCCTTCTAGCGGAGAAATGAATCGAGAACTCCTCAGCAATCACCTCCAGATTCAACCCTCCAACTTTCTTCTTCATCACACGTCTCACTTCGATCCATCTTCTTCCCACGACGATTTTCTAGAGCAGATGTTCTCAACCATCCCTTCATCTACTTGGCCTGACCTCAATCCGGCCATCAATTCTGTCATTACCGGCGGCTCCAGCAAGCTCAGAGACTTCTCCGACGAAACTACCCTGCCGAATCCTGAAAATGGTGGCTACTCGTATGACGAGTCGGTAAACTTGGCCTCGAAGCTCCGAAGCCACCAGATCAGCGGGAGCTCTCCGGCTGTAAAAGCGGCGGCCGTGATGCTTCAGCAGCACTTCTTGATGTCCAGAGGAGTTGCCGGCGCTGGACATGGTAACTCATCTGGACTTCTCCCGATGCCTTTATCTATGGAGCCGCCACAAGATGAAGTCACTGATGGCTTGTCTACATTTAAATCTCATAATCCAGTGAGCGATCAAGCTCTCTTCAATGGATTCGCCAACCAGACGTTAAATCATCCACAAAATTTCCAGCCTCCTCAGGTATACCCAACCCAACGATCACAAAACCACGGAACTTCAGGTTCGGCGATCAACCAAGTTCCAGCTGGTGGCTCAAACGGGGCCACGGCGGCTCAGCCTCGACAGCGAGTGAGGGCTCGGAGAGGTCAAGCTACTGACCCTCACAGCATCGCTGAAAGATTGAGGAGGGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTTGTTCCTAACTCCAACAAGACCGACAAGGCTTCCATGCTGGATGAGATCATCGATTACGTTAAATTCCTACAGCTTCAAGTCAAGGTTCTTAGTATGAGCAGATTAGGGGGCGCGGCTGCCGTTGCTCCGCTTGTCGCCGATGTGTCTTCCGAGGGAGAAGGTGACTGCGTACGGGCCGGTGGAAACGGTGGGGCACTGGGCCGTCAGGGTGGAGCTCAGACGACGTCCGGAAACGGCGGCCTAACTGCGACGGAGCATCAGGTAGCTAGAATGATGGAGGAGGATATGGGGTCCGCCATGCAGTATTTGCAAGGGAAAGGCCTCTGCTTGATGCCCATTTCTCTCGCCACTGCGATTTCTACTGCCACGTGTCATTCGAGGAACCCCGTCATTAGTGGCCGTACGGGCCTCTTGTCCGACGTGGAAGGACCATCCTCCCCTAACATGTCTGCTCTGACCGTCCAGTCAGCAACCATAGTTAACGGCATTAGTGACCTCACCGTCAAAGACGCCGCTTCCATTTCAAAGCCATGA 1317 53.08 MQPSSGEMNRELLSNHLQIQPSNFLLHHTSHFDPSSSHDDFLEQMFSTIPSSTWPDLNPAINSVITGGSSKLRDFSDETTLPNPENGGYSYDESVNLASKLRSHQISGSSPAVKAAAVMLQQHFLMSRGVAGAGHGNSSGLLPMPLSMEPPQDEVTDGLSTFKSHNPVSDQALFNGFANQTLNHPQNFQPPQVYPTQRSQNHGTSGSAINQVPAGGSNGATAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNSNKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGEGDCVRAGGNGGALGRQGGAQTTSGNGGLTATEHQVARMMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPVISGRTGLLSDVEGPSSPNMSALTVQSATIVNGISDLTVKDAASISKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55838157 55840613 + Bda004253.1 Bda01g01945 1945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01945 438 PANTHER TRANSCRIPTION FACTOR BHLH69 30 395 - -
Bda01g01945 438 Pfam Helix-loop-helix DNA-binding domain 240 285 IPR011598 GO:0046983
Bda01g01945 438 MobiDBLite consensus disorder prediction 181 240 - -
Bda01g01945 438 MobiDBLite consensus disorder prediction 181 224 - -
Bda01g01945 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 295 IPR036638 GO:0046983
Bda01g01945 438 SMART finulus 241 290 IPR011598 GO:0046983
Bda01g01945 438 Gene3D - 232 299 IPR036638 GO:0046983
Bda01g01945 438 MobiDBLite consensus disorder prediction 68 88 - -
Bda01g01945 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Bda01g01945 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01589 Bda-Chr1:51739577 Bda01g01945 Bda-Chr1:55838157 9.53E-20 dispersed
Bda01g01945 Bda-Chr1:55838157 Bda04g00536 Bda-Chr4:53987459 3.19E-60 dispersed
Bda12g00025 Bda-Chr12:138065 Bda01g01945 Bda-Chr1:55838157 6.21E-19 dispersed
Bda12g00192 Bda-Chr12:1825543 Bda01g01945 Bda-Chr1:55838157 1.05E-17 dispersed
Bda13g01549 Bda-Chr13:38701893 Bda01g01945 Bda-Chr1:55838157 4.77E-18 dispersed
Bda14g00178 Bda-Chr14:1228380 Bda01g01945 Bda-Chr1:55838157 2.36E-11 dispersed
Bda15g00616 Bda-Chr15:9335231 Bda01g01945 Bda-Chr1:55838157 1.30E-17 dispersed
Bda01g01945 Bda-Chr1:55838157 Bda07g01202 Bda-Chr7:14414824 1.97E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15485 PF00010 HLH 6.60E-10 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01945 - - qsu:111987215 458.373