Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01948 ATGACGACCTGCATCAATGTTGCACCTGAGCAACTCTGCTATATACCCTGCAGCTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAATTTGTTTGACATTGTCACAGTCCGATGTGGTCACTGCACAAATCTCTGGACCGTGAACATGGCTTCTGCGTTTCAGTCACTTTCATGGCAAGATCCCCAGGTTCAAAATTACTCTTACAATCCACCCGATCATTATCGAATTGACTCTGGTTCGTCATCGAAATGCAACAAGATAACACTTCGTCCTCCGACCAAAACTTCAACCGAGCAAAGACTCGTTAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCGAACAACCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCACATTTTCCTCATATTCACTTTGGACTGATGCTAGAAACTAACAACCAGACCAAGGCCGATCACTCACCTGTCTTCGGCAGGGTTCCGAGAAGCAACTGA 552 45.47 MTTCINVAPEQLCYIPCSFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWTVNMASAFQSLSWQDPQVQNYSYNPPDHYRIDSGSSSKCNKITLRPPTKTSTEQRLVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNQTKADHSPVFGRVPRSN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55878994 55881535 - Bda004259.1 Bda01g01948 1948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01948 183 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Bda01g01948 183 PANTHER AXIAL REGULATOR YABBY 5 1 172 - -
Bda01g01948 183 SUPERFAMILY HMG-box 96 153 IPR036910 -
Bda01g01948 183 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Bda01g01948 183 CDD HMG-box 114 150 - -
Bda01g01948 183 Gene3D High mobility group box domain 96 155 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01948 K25796 YAB; plant-specific transcription factor YABBY family protein - tcc:18588779 292.352
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01948 Bda11g00056 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01948 Bda-Chr1:55878994 Bda02g00672 Bda-Chr2:47697065 4.49E-57 dispersed
Bda11g01167 Bda-Chr11:11996252 Bda01g01948 Bda-Chr1:55878994 2.08E-39 transposed
Bda01g01948 Bda-Chr1:55878994 Bda11g00056 Bda-Chr11:675973 7.13E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g495 . . Bda01g01948 Bda11g00056 Bpe01g00747 Bpe02g02129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo14g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01167 . 2 163 C2C2-YABBY Transcription Factor Family AT1G69180 54.9 4.8e-44 174.5
Bda07g00010 CCT 61 211 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 2.9e-40 161.8
Bda08g00564 BCT,CCT 64 219 C2C2-YABBY Transcription Factor Family AT2G45190 54.2 2.9e-40 161.8
Bda09g01385 . 103 278 C2C2-YABBY Transcription Factor Family AT1G08465 65.4 5.0e-57 217.6
Bda02g00672 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 61.1 5.5e-56 214.2
Bda08g00564 BCT,CCT 21 193 C2C2-YABBY Transcription Factor Family AT1G08465 57.2 5.7e-45 177.6
Bda07g00010 CCT 18 188 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 9.1e-43 170.2
Bda06g00039 BCT,CCT 19 183 C2C2-YABBY Transcription Factor Family AT1G08465 55.8 2.9e-41 165.2
Bda07g00010 CCT 28 210 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 1.2e-46 183.3
Bda08g00564 BCT,CCT 31 217 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 8.5e-45 177.2
Bda06g00039 BCT,CCT 29 194 C2C2-YABBY Transcription Factor Family AT4G00180 52.2 5.3e-39 157.9
Bda01g01948 BCT 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 1.1e-63 239.6
Bda11g00056 BCT 10 171 C2C2-YABBY Transcription Factor Family AT2G26580 64.2 1.1e-50 196.4
Bda02g00672 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 1.5e-49 192.6
Bda09g01385 . 103 267 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 4.3e-44 174.5
Bda08g00564 BCT,CCT 21 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.7 9.6e-44 173.3
Bda07g00010 CCT 18 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.5e-41 164.5
Bda06g00039 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT2G26580 50.6 1.3e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15486 PF04690 YABBY 3.50E-68 CL0114 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01948 Bda_Chr01 FPKM 38.223854 41.776703 27.01771 28.372503 44.766247 43.923336 43.223511 41.725235 40.841496