Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01948 ATGACGACCTGCATCAATGTTGCACCTGAGCAACTCTGCTATATACCCTGCAGCTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAATTTGTTTGACATTGTCACAGTCCGATGTGGTCACTGCACAAATCTCTGGACCGTGAACATGGCTTCTGCGTTTCAGTCACTTTCATGGCAAGATCCCCAGGTTCAAAATTACTCTTACAATCCACCCGATCATTATCGAATTGACTCTGGTTCGTCATCGAAATGCAACAAGATAACACTTCGTCCTCCGACCAAAACTTCAACCGAGCAAAGACTCGTTAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGGCGAACAACCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCACATTTTCCTCATATTCACTTTGGACTGATGCTAGAAACTAACAACCAGACCAAGGCCGATCACTCACCTGTCTTCGGCAGGGTTCCGAGAAGCAACTGA 552 45.47 MTTCINVAPEQLCYIPCSFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWTVNMASAFQSLSWQDPQVQNYSYNPPDHYRIDSGSSSKCNKITLRPPTKTSTEQRLVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNQTKADHSPVFGRVPRSN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55878994 55881535 - Bda004259.1 Bda01g01948 1948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01948 183 Pfam YABBY protein 8 160 IPR006780 GO:0007275
Bda01g01948 183 PANTHER AXIAL REGULATOR YABBY 5 1 172 - -
Bda01g01948 183 SUPERFAMILY HMG-box 96 153 IPR036910 -
Bda01g01948 183 PANTHER PROTEIN YABBY 6-RELATED 1 172 IPR006780 GO:0007275
Bda01g01948 183 CDD HMG-box 114 150 - -
Bda01g01948 183 Gene3D High mobility group box domain 96 155 IPR036910 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01948 Bda11g00056 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01948 Bda-Chr1:55878994 Bda02g00672 Bda-Chr2:47697065 4.49E-57 dispersed
Bda11g01167 Bda-Chr11:11996252 Bda01g01948 Bda-Chr1:55878994 2.08E-39 transposed
Bda01g01948 Bda-Chr1:55878994 Bda11g00056 Bda-Chr11:675973 7.13E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15486 PF04690 YABBY 3.50E-68 CL0114 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01948 K25796 - tcc:18588779 292.352