Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01952 ATGGAGAAGAAATGTGGATGTTGGGCTGTTCTCAAACGCGGTGCTAAAGGAAACTGCAAGTCCTCTGCCTCTAAAGATTCTGCTAACGTTATTCCTCGCAGCAGCCTGGTTTACGATGCTGCGACGGAGACACGATACCTTAATGCAAGCAATCGAGCACTCTGCTCCTCGATTGAAGCTCACCTATCATCTGATAATCCCAACTCATCTCCACCAGAGAACAAATCTACATGCCATTTGCTTCAATTTTCTTTTCAGGAGTTAAAATCTGCAACAGGAAATTTCAGACCAGATAGTATAGTTGGGGAGGGTGGATTTGGATTTGTCTTCAAAGGATGGATCGAGGAGAACGGGACGGCACCTGCAAAACCCGGATCGGGAATTACTGTTGCCGTTAAGAGCTTGAAGCCAGATGGTCTTCAAGGCCACAGAGAGTGGATGGCTGAAGTTGACTTTCTTGGTCAGCTCCATCATCCTAATCTCGTTAAGCTTATTGGCTTCTGCATCGAAGATGATCAACGATTGCTCGTATATGAATTTATGACGCGTGGAAGTCTTGAAAATCATCTTTTCAGGAGGACTGTACCTCTTCCATGGTGCGTGAGGCTTAAGATTGCGCTCGGTGCAGCCAAAGGACTTGCCTTTCTCCATTACGCTCCGGAACCCGTCATTTACAGAGATTTTAAGACTTCCAATATTTTGCTTGATTCAGAATACAACGCCAAGCTTTCGGATTTTGGTTTGGCAAAAGCCGGCCCTCGTGAAGGCAAAACACATGTTTCTACTCGAGTCGTTGGAACTTACGGCTATGCCGCACCCGAATATGTCATGACAGGACATCTAACATCGAAGTGCGACGTCTATAGTTTTGGCGTAGTTCTTCTCGAGATTTTGACCGGCCGAAGATCGATGGACAAAAAAAGACCAAGTGGTGAGCAGAATCTTGTGACATGGGCTCGACCATATCTCTCTGACAAAAAACGACTTTACCAAATTGTCGATCCTCGGTTAGAGCTTAACTACTCCATTAAAGGCGTTCAAAAGATCTCTCAACTTGCTTCCAGCTGCCTCAACCGAGACCTGAAATGTCGTCCGACAATGGATGAAGTCGTAAAGATTCTCTCGTTATTACAAGGTCTTAACGACCTGGCCGTTTTGTCGTACCATTCTCGGATATCTCAGCAAGGGCGGAGGAAAGAAGAAAGCGGATTCTACACCACAGCTCACGTATTTCAATACGAAAAGCATCAGAGCTTCTCCCCTGAATACTAG 1272 45.75 MEKKCGCWAVLKRGAKGNCKSSASKDSANVIPRSSLVYDAATETRYLNASNRALCSSIEAHLSSDNPNSSPPENKSTCHLLQFSFQELKSATGNFRPDSIVGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWMAEVDFLGQLHHPNLVKLIGFCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWCVRLKIALGAAKGLAFLHYAPEPVIYRDFKTSNILLDSEYNAKLSDFGLAKAGPREGKTHVSTRVVGTYGYAAPEYVMTGHLTSKCDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVTWARPYLSDKKRLYQIVDPRLELNYSIKGVQKISQLASSCLNRDLKCRPTMDEVVKILSLLQGLNDLAVLSYHSRISQQGRRKEESGFYTTAHVFQYEKHQSFSPEY 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55934194 55937046 + Bda004265.1 Bda01g01952 1952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01952 423 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
Bda01g01952 423 PANTHER OS01G0588500 PROTEIN 56 390 - -
Bda01g01952 423 SUPERFAMILY Protein kinase-like (PK-like) 77 380 IPR011009 -
Bda01g01952 423 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Bda01g01952 423 PANTHER OS01G0588500 PROTEIN-RELATED 56 390 - -
Bda01g01952 423 CDD STKc_IRAK 101 377 - -
Bda01g01952 423 ProSiteProfiles Protein kinase domain profile. 95 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01952 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Bda01g01952 423 Pfam Protein tyrosine and serine/threonine kinase 100 374 IPR001245 GO:0004672|GO:0006468
Bda01g01952 423 Gene3D Transferase(Phosphotransferase) domain 1 181 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01952 Bda-Chr1:55934194 Bda12g00531 Bda-Chr12:8335639 1.68E-171 dispersed
Bda01g01952 Bda-Chr1:55934194 Bda11g01235 Bda-Chr11:12856575 1.30E-173 transposed
Bda01g01952 Bda-Chr1:55934194 Bda01g02251 Bda-Chr1:58286972 1.83E-173 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69467 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01952 - - qsu:111988517 689.108