Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01967 ATGACTATGGAGGACCGAGTGGATGCAGTTTCCGGCGAGGCTGACAAGTTTCCGGTCGGTCTGCGTGTCCTTGTGGTGGACGACGATCTTTGTTGCCTCAAATTGGTGGAGACTATTCTTAAAAAGTGCCGGTTTAATGTAACTACCGCCAGTGATCCAATGGAAGCATTGAAGATGTTAAGGGAAGATAAAAAGCGGTTTGAAATTGTAATTACTGATGTAAATATGCCTGGAATGGATGGTTTTAAGCTCCTCGAGATGATTGGGCTTGAAATGGACCTTCCCGTTATAATGTTGTCGGCTCATAGCGACACAAAATACGTTATGAAAGGAGTTCAACACGGGGCCTGCGATTATCTGGTGAAGCCGTGTCGAATGTTGGAGTTGCAGAACATTTGGGTGCATGTTTTCAAGAGAAAGCATATGAGCCAGAAGGACAAGAACAATAACAATAACAGCCCAAATCAAGATGATGAACAAGGATTGACACAGCCTGAAAATCCCAAAAATTCCGATGATTCGAAAGCGGGTCAAAAGAGGAAGGACCGGAACCAAGGCGAGGAAGACGAGAATGGCGAAAGTGAGACCGAAGATCCGGCTACGACTCAGAAGAAGCCAAGAGTGGTGTGGTCACTCGACCTGCACCAGAAGTTTGTAGCAGCTATTACTCATTTGACTATTGAAAAGGCCGTCCCGAAGAAGATTCTCGATTGGATGAACATTGAAGGACTCACCCGAGAAAACGTGGCTAGCCATCTTCAGAAATATAGGCTCTACCTGAAAAGAATTGAGGCTGCAAAAAATAAACAGGAAAATCCTAGTCACATGAGGTCAATTGAGGGATTTGGGTTGCCGGAATCTAGAAGATTTCCGACCATTCCATTCTCGTCAACTCCGCCGAGTGGAGTTCTTAGTAGATTCAACTCTTCTTCCGGATTGAACATGAATGGGATTGTTTCTCCACGATTAATCCAGCAAAATACTTCTCAAAACATGAACAATTCCTTCGGTTTACGCGGAAAATTCCCGCAAAGCCAATTGCCGGAGTTATTTCAGGGAAATCCGAGATCATTAGAGGTTAATCCAATTAACAATCTCTCTGGCTTCTCATATCCAACTAGTTTTCCCAACAATAGAGTTGGTTTAGCTAGCTCGATAAATCCCAGGCCGAGATTGTTGGCTAATCATTTGCTTTTGCAAGGAAATCAACATGTTCTAGGAGCGCCTCCATTGAAATCGGAATCTTTTGATATTGGCACAAACGTCGCGTCGAATCTTTTGGGTCATGATCAAAGCAAAAGAGATTGGCAGCAAGAAGTTCATTTATCTAAATTTCCATCGACCAGCCTCGGATCATTCGAAACTCACTATCATCATGAAATGCCTTTGAACAACTCGAGAATATCTCATGCTCACTCTCCAATCGGTCTACCATCGATGAATGCAGTTCAAAATCATCAGCCTAATTTTCTAGTAGACGATCCCTGCCAAGAAGATCTGATCGGCAGTGTCGTCCAAACTGTGAATTGTACACAAAAGCCGAATGGGGAAGAACATAAACCCGTTTTTGGACATAATCCAAATCATTCCGTGATGAATCCTCTACCTTTGGCTGATGAAATTATGGCTCCAAACGACATGGCATGTGTACAAAATCCCGATATATCACGATTGATCTCCCAATCCAATGACGGTATGGTATCATTTGGACAGCTCAACGCTGTCGATAAACCGCTGGCAGACCCGAGGATGAATTTCAATGCAAACGACTTCTTGAATATGGCCCAAGATGTGTTCTTTCAAAGTGACTTTGATTCATTAAATGATATTGTCAATGTGGACGACGAACATGTAATATCTCTAATCTTCCTCCTATATATCTCTAATTATCTCAATCTAAAAAAGTCCTTGCCGAAAATAAAATTTCGGTTTGACAAAAAATTAGTCTGA 1950 42.46 MTMEDRVDAVSGEADKFPVGLRVLVVDDDLCCLKLVETILKKCRFNVTTASDPMEALKMLREDKKRFEIVITDVNMPGMDGFKLLEMIGLEMDLPVIMLSAHSDTKYVMKGVQHGACDYLVKPCRMLELQNIWVHVFKRKHMSQKDKNNNNNSPNQDDEQGLTQPENPKNSDDSKAGQKRKDRNQGEEDENGESETEDPATTQKKPRVVWSLDLHQKFVAAITHLTIEKAVPKKILDWMNIEGLTRENVASHLQKYRLYLKRIEAAKNKQENPSHMRSIEGFGLPESRRFPTIPFSSTPPSGVLSRFNSSSGLNMNGIVSPRLIQQNTSQNMNNSFGLRGKFPQSQLPELFQGNPRSLEVNPINNLSGFSYPTSFPNNRVGLASSINPRPRLLANHLLLQGNQHVLGAPPLKSESFDIGTNVASNLLGHDQSKRDWQQEVHLSKFPSTSLGSFETHYHHEMPLNNSRISHAHSPIGLPSMNAVQNHQPNFLVDDPCQEDLIGSVVQTVNCTQKPNGEEHKPVFGHNPNHSVMNPLPLADEIMAPNDMACVQNPDISRLISQSNDGMVSFGQLNAVDKPLADPRMNFNANDFLNMAQDVFFQSDFDSLNDIVNVDDEHVISLIFLLYISNYLNLKKSLPKIKFRFDKKLV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56059137 56061679 - Bda004282.1 Bda01g01967 1967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01967 649 CDD REC_typeB_ARR-like 23 137 - -
Bda01g01967 649 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Bda01g01967 649 MobiDBLite consensus disorder prediction 172 188 - -
Bda01g01967 649 Gene3D - 201 264 - -
Bda01g01967 649 SUPERFAMILY CheY-like 20 146 IPR011006 -
Bda01g01967 649 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Bda01g01967 649 MobiDBLite consensus disorder prediction 142 204 - -
Bda01g01967 649 Gene3D - 21 159 - -
Bda01g01967 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 615 - -
Bda01g01967 649 SMART REC_2 21 133 IPR001789 GO:0000160
Bda01g01967 649 MobiDBLite consensus disorder prediction 147 171 - -
Bda01g01967 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 615 IPR045279 GO:0009736
Bda01g01967 649 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Bda01g01967 649 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01967 K14491 ARR-B; two-component response regulator ARR-B family - jre:109012904 467.233
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01967 Bda02g00326 CCT
Bda01g01967 Bda09g00841 CCT
Bda01g01967 Bda02g00326 ECH
Bda01g01967 Bda09g00841 ECH
Bda01g01967 Bda11g00074 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01967 Bda-Chr1:56059137 Bda09g00841 Bda-Chr9:19284393 5.26E-147 dispersed
Bda01g01967 Bda-Chr1:56059137 Bda11g00074 Bda-Chr11:917530 7.14E-150 wgd
Bda01g01967 Bda-Chr1:56059137 Bda02g00326 Bda-Chr2:43285358 8.24E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g640 Blo01g00600 Blo16g00870 Bda01g01967 Bda11g00074 Bpe01g00636 Bpe02g02148 Bma07g00742 . Cmo10g00516 Cmo11g00476 . . . . Sed11g0169 Cpe04g01239 Cpe18g00551 Bhi02g00898 Tan09g1542 Cmetu02g1717 . . . . . . . . . . . Cone2ag0549 Cone16ag0459 Cone4ag0611 . Lsi06g01039 . . Cme02g01081 Blo08g00530 . Bda02g00326 Bda09g00841 Bpe08g00654 Bpe13g01134 Bma01g00295 Bma06g00994 . . . Cma10g00483 . Car10g00447 . . . . . . . . . . Cla06g01213 Cam06g1357 Cec06g1400 Cco06g1405 Clacu06g1305 Cmu06g1276 Cre06g2086 . Csa01g01861 Chy02g02099 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda07g01573 . 1 163 Response Regulator Gene Family AT1G59940 66.5 1.3e-55 213.8
Bda10g01007 . 1 164 Response Regulator Gene Family AT1G59940 66.7 4.8e-55 211.8
Bda11g01678 . 1 150 Response Regulator Gene Family AT1G59940 67.5 3.0e-49 192.6
Bda14g00828 . 15 152 Response Regulator Gene Family AT1G59940 64.0 6.7e-41 164.9
Bda15g00091 . 8 149 Response Regulator Gene Family AT1G59940 58.5 1.4e-38 157.1
Bda07g01573 . 19 192 Response Regulator Gene Family AT1G10470 63.4 1.4e-54 209.9
Bda10g01007 . 28 190 Response Regulator Gene Family AT1G10470 67.5 4.5e-53 204.9
Bda11g01678 . 15 172 Response Regulator Gene Family AT1G10470 65.4 2.3e-49 192.6
Bda14g00828 . 15 168 Response Regulator Gene Family AT1G10470 60.6 1.8e-41 166.4
Bda15g00091 . 10 171 Response Regulator Gene Family AT1G10470 53.1 5.8e-37 151.4
Bda11g01678 . 24 148 Response Regulator Gene Family AT3G48100 79.5 1.8e-51 199.1
Bda07g01573 . 32 160 Response Regulator Gene Family AT3G48100 72.1 2.9e-49 191.8
Bda10g01007 . 32 159 Response Regulator Gene Family AT3G48100 75.0 8.5e-49 190.3
Bda14g00828 . 24 175 Response Regulator Gene Family AT3G48100 63.0 6.3e-44 174.1
Bda15g00091 . 3 153 Response Regulator Gene Family AT3G48100 53.0 5.2e-38 154.5
Bda11g01678 . 16 172 Response Regulator Gene Family AT5G62920 71.1 2.6e-53 205.3
Bda07g01573 . 30 160 Response Regulator Gene Family AT5G62920 71.8 4.3e-48 188.0
Bda10g01007 . 30 159 Response Regulator Gene Family AT5G62920 74.6 2.8e-47 185.3
Bda14g00828 . 24 174 Response Regulator Gene Family AT5G62920 65.8 2.6e-45 178.7
Bda15g00091 . 10 152 Response Regulator Gene Family AT5G62920 55.2 2.4e-38 155.6
Bda11g01678 . 5 172 Response Regulator Gene Family AT1G19050 65.3 9.2e-52 200.3
Bda10g01007 . 26 189 Response Regulator Gene Family AT1G19050 60.0 1.4e-44 176.4
Bda07g01573 . 31 205 Response Regulator Gene Family AT1G19050 56.0 2.4e-44 175.6
Bda14g00828 . 23 160 Response Regulator Gene Family AT1G19050 69.1 2.7e-43 172.2
Bda15g00091 . 8 154 Response Regulator Gene Family AT1G19050 53.7 6.4e-37 151.0
Bda15g00091 . 1 149 Response Regulator Gene Family AT2G41310 60.9 2.4e-45 179.1
Bda07g01573 . 33 166 Response Regulator Gene Family AT2G41310 58.2 2.8e-41 165.6
Bda10g01007 . 33 170 Response Regulator Gene Family AT2G41310 58.6 3.0e-40 162.2
Bda11g01678 . 19 147 Response Regulator Gene Family AT2G41310 59.4 7.5e-39 157.5
Bda15g00091 . 1 176 Response Regulator Gene Family AT3G57040 54.5 7.5e-50 194.1
Bda07g01573 . 31 167 Response Regulator Gene Family AT3G57040 58.2 1.8e-43 172.9
Bda10g01007 . 31 161 Response Regulator Gene Family AT3G57040 60.7 7.5e-42 167.5
Bda11g01678 . 23 147 Response Regulator Gene Family AT3G57040 61.0 4.1e-40 161.8
Bda14g00441 . 1 144 Response Regulator Gene Family AT3G57040 55.3 9.5e-37 150.6
Bda11g01678 . 21 172 Response Regulator Gene Family AT1G74890 67.5 4.6e-51 198.0
Bda10g01007 . 23 163 Response Regulator Gene Family AT1G74890 68.1 9.9e-46 180.3
Bda07g01573 . 25 162 Response Regulator Gene Family AT1G74890 66.7 1.3e-45 179.9
Bda14g00828 . 21 174 Response Regulator Gene Family AT1G74890 63.5 1.9e-44 176.0
Bda15g00091 . 4 154 Response Regulator Gene Family AT1G74890 53.0 3.1e-39 158.7
Bda10g01007 . 30 161 Response Regulator Gene Family AT2G40670 62.2 8.5e-40 160.2
Bda07g01573 . 30 157 Response Regulator Gene Family AT2G40670 61.1 1.1e-39 159.8
Bda11g01678 . 23 147 Response Regulator Gene Family AT2G40670 61.8 1.4e-37 152.9
Bda07g01573 . 16 157 Response Regulator Gene Family AT3G56380 57.7 5.0e-42 167.5
Bda10g01007 . 22 161 Response Regulator Gene Family AT3G56380 61.0 5.0e-42 167.5
Bda11g01678 . 16 147 Response Regulator Gene Family AT3G56380 59.0 1.1e-38 156.4
Bda11g00187 . 76 338 Response Regulator Gene Family AT3G16857 52.1 1.6e-70 264.2
Bda01g01795 . 76 337 Response Regulator Gene Family AT3G16857 52.1 1.3e-69 261.2
Bda08g00304 BCT 26 251 Response Regulator Gene Family AT4G16110 73.5 8.8e-80 295.0
Bda11g00187 . 35 265 Response Regulator Gene Family AT4G16110 59.0 2.0e-68 257.3
Bda01g01795 . 35 265 Response Regulator Gene Family AT4G16110 59.0 1.0e-67 255.0
Bda03g01158 BCT 71 263 Response Regulator Gene Family AT4G16110 73.1 8.0e-65 245.4
Bda09g00841 BCT,CCT,ECH 8 249 Response Regulator Gene Family AT4G16110 59.0 1.1e-61 235.0
Bda11g00074 BCT,CCT,ECH 15 264 Response Regulator Gene Family AT4G31920 60.0 3.3e-80 296.2
Bda01g01967 BCT,CCT,ECH 1 272 Response Regulator Gene Family AT4G31920 50.7 5.1e-73 272.3
Bda11g00187 . 31 292 Response Regulator Gene Family AT4G31920 55.3 1.1e-72 271.2
Bda01g01795 . 34 292 Response Regulator Gene Family AT4G31920 55.4 2.5e-72 270.0
Bda08g00304 BCT 25 280 Response Regulator Gene Family AT4G31920 55.0 5.3e-70 262.3
Bda03g01158 BCT 71 284 Response Regulator Gene Family AT4G31920 59.3 5.7e-56 215.7
Bda01g01795 . 117 285 Response Regulator Gene Family AT1G67710 54.7 2.4e-41 166.8
Bda11g00187 . 117 285 Response Regulator Gene Family AT1G67710 54.1 7.1e-41 165.2
Bda09g00841 BCT,CCT,ECH 18 390 Response Regulator Gene Family AT2G25180 57.9 2.1e-101 366.7
Bda11g00187 . 36 297 Response Regulator Gene Family AT2G25180 57.3 4.1e-76 282.7
Bda01g01795 . 36 292 Response Regulator Gene Family AT2G25180 58.0 1.5e-75 280.8
Bda11g00187 . 97 334 Response Regulator Gene Family AT2G01760 58.3 4.2e-64 241.9
Bda01g01795 . 97 341 Response Regulator Gene Family AT2G01760 55.8 3.4e-61 232.3
Bda03g01158 BCT 100 333 Response Regulator Gene Family AT2G01760 53.1 2.0e-50 196.4
Bda11g00074 BCT,CCT,ECH 76 261 Response Regulator Gene Family AT2G01760 52.3 8.9e-46 181.0
Bda08g00304 BCT 27 271 Response Regulator Gene Family AT5G58080 60.4 4.8e-67 252.7
Bda03g01158 BCT 71 334 Response Regulator Gene Family AT5G58080 52.0 1.6e-54 211.1
Bda03g00757 . 65 297 Response Regulator Gene Family AT5G60100 58.7 6.3e-68 255.0
Bda14g00095 . 41 303 Response Regulator Gene Family AT5G60100 54.4 7.2e-64 241.5
Bda08g00081 . 24 157 Response Regulator Gene Family AT5G60100 61.9 1.1e-43 174.5
Bda14g00095 . 175 316 Response Regulator Gene Family AT5G02810 59.1 2.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017278 1 0 1 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15488 PF00072 Response_reg 7.90E-26 CL0304 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01967 Bda_Chr01 FPKM 28.366167 27.944202 32.994686 34.437325 43.77092 41.693733 42.354427 10.534322 9.99346