Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01967 ATGACTATGGAGGACCGAGTGGATGCAGTTTCCGGCGAGGCTGACAAGTTTCCGGTCGGTCTGCGTGTCCTTGTGGTGGACGACGATCTTTGTTGCCTCAAATTGGTGGAGACTATTCTTAAAAAGTGCCGGTTTAATGTAACTACCGCCAGTGATCCAATGGAAGCATTGAAGATGTTAAGGGAAGATAAAAAGCGGTTTGAAATTGTAATTACTGATGTAAATATGCCTGGAATGGATGGTTTTAAGCTCCTCGAGATGATTGGGCTTGAAATGGACCTTCCCGTTATAATGTTGTCGGCTCATAGCGACACAAAATACGTTATGAAAGGAGTTCAACACGGGGCCTGCGATTATCTGGTGAAGCCGTGTCGAATGTTGGAGTTGCAGAACATTTGGGTGCATGTTTTCAAGAGAAAGCATATGAGCCAGAAGGACAAGAACAATAACAATAACAGCCCAAATCAAGATGATGAACAAGGATTGACACAGCCTGAAAATCCCAAAAATTCCGATGATTCGAAAGCGGGTCAAAAGAGGAAGGACCGGAACCAAGGCGAGGAAGACGAGAATGGCGAAAGTGAGACCGAAGATCCGGCTACGACTCAGAAGAAGCCAAGAGTGGTGTGGTCACTCGACCTGCACCAGAAGTTTGTAGCAGCTATTACTCATTTGACTATTGAAAAGGCCGTCCCGAAGAAGATTCTCGATTGGATGAACATTGAAGGACTCACCCGAGAAAACGTGGCTAGCCATCTTCAGAAATATAGGCTCTACCTGAAAAGAATTGAGGCTGCAAAAAATAAACAGGAAAATCCTAGTCACATGAGGTCAATTGAGGGATTTGGGTTGCCGGAATCTAGAAGATTTCCGACCATTCCATTCTCGTCAACTCCGCCGAGTGGAGTTCTTAGTAGATTCAACTCTTCTTCCGGATTGAACATGAATGGGATTGTTTCTCCACGATTAATCCAGCAAAATACTTCTCAAAACATGAACAATTCCTTCGGTTTACGCGGAAAATTCCCGCAAAGCCAATTGCCGGAGTTATTTCAGGGAAATCCGAGATCATTAGAGGTTAATCCAATTAACAATCTCTCTGGCTTCTCATATCCAACTAGTTTTCCCAACAATAGAGTTGGTTTAGCTAGCTCGATAAATCCCAGGCCGAGATTGTTGGCTAATCATTTGCTTTTGCAAGGAAATCAACATGTTCTAGGAGCGCCTCCATTGAAATCGGAATCTTTTGATATTGGCACAAACGTCGCGTCGAATCTTTTGGGTCATGATCAAAGCAAAAGAGATTGGCAGCAAGAAGTTCATTTATCTAAATTTCCATCGACCAGCCTCGGATCATTCGAAACTCACTATCATCATGAAATGCCTTTGAACAACTCGAGAATATCTCATGCTCACTCTCCAATCGGTCTACCATCGATGAATGCAGTTCAAAATCATCAGCCTAATTTTCTAGTAGACGATCCCTGCCAAGAAGATCTGATCGGCAGTGTCGTCCAAACTGTGAATTGTACACAAAAGCCGAATGGGGAAGAACATAAACCCGTTTTTGGACATAATCCAAATCATTCCGTGATGAATCCTCTACCTTTGGCTGATGAAATTATGGCTCCAAACGACATGGCATGTGTACAAAATCCCGATATATCACGATTGATCTCCCAATCCAATGACGGTATGGTATCATTTGGACAGCTCAACGCTGTCGATAAACCGCTGGCAGACCCGAGGATGAATTTCAATGCAAACGACTTCTTGAATATGGCCCAAGATGTGTTCTTTCAAAGTGACTTTGATTCATTAAATGATATTGTCAATGTGGACGACGAACATGTAATATCTCTAATCTTCCTCCTATATATCTCTAATTATCTCAATCTAAAAAAGTCCTTGCCGAAAATAAAATTTCGGTTTGACAAAAAATTAGTCTGA 1950 42.46 MTMEDRVDAVSGEADKFPVGLRVLVVDDDLCCLKLVETILKKCRFNVTTASDPMEALKMLREDKKRFEIVITDVNMPGMDGFKLLEMIGLEMDLPVIMLSAHSDTKYVMKGVQHGACDYLVKPCRMLELQNIWVHVFKRKHMSQKDKNNNNNSPNQDDEQGLTQPENPKNSDDSKAGQKRKDRNQGEEDENGESETEDPATTQKKPRVVWSLDLHQKFVAAITHLTIEKAVPKKILDWMNIEGLTRENVASHLQKYRLYLKRIEAAKNKQENPSHMRSIEGFGLPESRRFPTIPFSSTPPSGVLSRFNSSSGLNMNGIVSPRLIQQNTSQNMNNSFGLRGKFPQSQLPELFQGNPRSLEVNPINNLSGFSYPTSFPNNRVGLASSINPRPRLLANHLLLQGNQHVLGAPPLKSESFDIGTNVASNLLGHDQSKRDWQQEVHLSKFPSTSLGSFETHYHHEMPLNNSRISHAHSPIGLPSMNAVQNHQPNFLVDDPCQEDLIGSVVQTVNCTQKPNGEEHKPVFGHNPNHSVMNPLPLADEIMAPNDMACVQNPDISRLISQSNDGMVSFGQLNAVDKPLADPRMNFNANDFLNMAQDVFFQSDFDSLNDIVNVDDEHVISLIFLLYISNYLNLKKSLPKIKFRFDKKLV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56059137 56061679 - Bda004282.1 Bda01g01967 1967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01967 649 CDD REC_typeB_ARR-like 23 137 - -
Bda01g01967 649 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Bda01g01967 649 MobiDBLite consensus disorder prediction 172 188 - -
Bda01g01967 649 Gene3D - 201 264 - -
Bda01g01967 649 SUPERFAMILY CheY-like 20 146 IPR011006 -
Bda01g01967 649 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Bda01g01967 649 MobiDBLite consensus disorder prediction 142 204 - -
Bda01g01967 649 Gene3D - 21 159 - -
Bda01g01967 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 615 - -
Bda01g01967 649 SMART REC_2 21 133 IPR001789 GO:0000160
Bda01g01967 649 MobiDBLite consensus disorder prediction 147 171 - -
Bda01g01967 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 615 IPR045279 GO:0009736
Bda01g01967 649 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Bda01g01967 649 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01967 Bda02g00326 CCT
Bda01g01967 Bda09g00841 CCT
Bda01g01967 Bda02g00326 ECH
Bda01g01967 Bda09g00841 ECH
Bda01g01967 Bda11g00074 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01967 Bda-Chr1:56059137 Bda09g00841 Bda-Chr9:19284393 5.26E-147 dispersed
Bda01g01967 Bda-Chr1:56059137 Bda11g00074 Bda-Chr11:917530 7.14E-150 wgd
Bda01g01967 Bda-Chr1:56059137 Bda02g00326 Bda-Chr2:43285358 8.24E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15488 PF00072 Response_reg 7.90E-26 CL0304 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01967 K14491 - jre:109012904 467.233