Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01978 ATGAATGCAAAGTTCCCGACATGGATGTCAAAGAAAGATCGCCGGATCTTGCTGAGCGATGACGAATATGACCCAAGCCAAGTGCTAACTGTTGCTGCAGACGGAACAGGAAACTTCACCACCATTACAGATGCTGTCAATTTTGCTCCAAACAATAGTAACGACAGAACAATTATCTATATAACTCAAGGGGTTTATGAAGAAAACGTGCAGATACCAAACAACAAGCCCAACATTGTTTTTCTGGGGGATGGAAGTGACGTTACCATCATTACTGGTAAAAGAAGCGTGGGAGATGGTTGGACCACTTTCAGATCTGCAACCTTGGCGGTGTCTGGAGACGGATTCTTGGCTAGAGATATAACAATTATGAACACAGCTGGACCAGAGAAGCACCAAGCGGTTGCCCTGAGAGTGAATGCAGACTTGACTGCATTATATCGGTGTTCAATAAATGGTCACCAGGATTCATTGTATGTGCACTCGTTTCGTCAATTCTATAGAGAGTGCAACATTTCAGGAACAGTAGATTACATATTTGGTAATGCCGCAGTGGTTTTCCAGGCATGCAAAATAATTTCCATAATGCCGATGTCCAACCAATTCACAGTTATCACGGCCCAGTCTCGAGATAACCCTGATGAGGTGACTGGAATTTCTATCCAGAACTGCTCAGTAATTGCTTCAGATGAGCTGAATGCAAACCGTGCGACGGTCAAAAGTTACCTTGGGAGGCCATGGCGGGTGTACTCTCGATCAGTATACATAGGGTCCTACATTGATGAGTTCATTGAGCCAGTGGGATGGACCAAGTGGTCTGGTGATGAAGGATTGGAGACACTCTACTATGGAGAGTATGGAAACTACGGTCCTGGTTCGGGAACGGATGACAGAGTTTCGTGGGAAGGGTACCACAAAATGGATTACTATGATGCTTATAATTTCACGGTGTCAGAGTTTATCACTGGCGATGAGTGGCTTGACTCCACTTCTTTTCCTTACGACCATGGAATTTGA 1017 44.74 MNAKFPTWMSKKDRRILLSDDEYDPSQVLTVAADGTGNFTTITDAVNFAPNNSNDRTIIYITQGVYEENVQIPNNKPNIVFLGDGSDVTIITGKRSVGDGWTTFRSATLAVSGDGFLARDITIMNTAGPEKHQAVALRVNADLTALYRCSINGHQDSLYVHSFRQFYRECNISGTVDYIFGNAAVVFQACKIISIMPMSNQFTVITAQSRDNPDEVTGISIQNCSVIASDELNANRATVKSYLGRPWRVYSRSVYIGSYIDEFIEPVGWTKWSGDEGLETLYYGEYGNYGPGSGTDDRVSWEGYHKMDYYDAYNFTVSEFITGDEWLDSTSFPYDHGI 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56162542 56163944 + Bda004295.1 Bda01g01978 1978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01978 338 Pfam Pectinesterase 30 324 IPR000070 GO:0030599|GO:0042545
Bda01g01978 338 ProSitePatterns Pectinesterase signature 2. 172 181 IPR033131 -
Bda01g01978 338 Gene3D - 24 338 IPR012334 -
Bda01g01978 338 SUPERFAMILY Pectin lyase-like 25 336 IPR011050 -
Bda01g01978 338 PANTHER PECTINESTERASE 8 337 - -
Bda01g01978 338 PANTHER PECTINESTERASE 8 337 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01978 Bda09g01054 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01978 Bda-Chr1:56162542 Bda13g00493 Bda-Chr13:5820585 8.44E-121 dispersed
Bda01g01978 Bda-Chr1:56162542 Bda09g01054 Bda-Chr9:40784923 2.31E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01978 - - twl:119993469 550.821