Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01999 ATGGACGGAGCAGCTGCTTACAACCCCCGAACTGTGGAAGAGGTTTTCAAGGATTTTAGGGGCCGTCGAGCCGGCATGATTAAAGCTCTCACCACTGACGTCGAAGAATTTTATCAGCGGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGCAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCTCCGGAGCTGCCCGAGCCTGCATTAGGTATTAACTTTGCAAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCATGGTTACTTTCAGTGGCTTTTTATTTTGGTTCCAGATTTGGATTCGATAAAGCTGACAGGAAACGTCTGTTCACGATGATAAATGATTTACCCACAATATTCGAGGTGGTGACCGGAAGTGTGAAGAAACAGGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGAAATAAATCTAAGTCAGGCTCAAAAGGGGTAAGTGAAAATATATTATCCTTGTCTGCAACTATGGAAGAAGAGTTGGAAGAAGCTGAGGAGGAGGAGGAAGAGGAGGAGGAGCATGGGGAGACCTTATGTGGGGCATGTGGAGATAACTATGCATCGGACGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCACGGCAAATGCGTAAAGATAACTCCAGCAAAGGCTGAGCACATCAAGCAATATAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGGCCCTGA 759 45.98 MDGAAAYNPRTVEEVFKDFRGRRAGMIKALTTDVEEFYQRCDPEKENLCLYGLPNEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDLPTIFEVVTGSVKKQGKEKSSISNHSRNKSKSGSKGVSENILSLSATMEEELEEAEEEEEEEEEHGETLCGACGDNYASDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSNKRARP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56332600 56335684 - Bda004318.1 Bda01g01999 1999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01999 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 252 - -
Bda01g01999 252 CDD PHD_AL_plant 198 248 IPR044104 -
Bda01g01999 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
Bda01g01999 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Bda01g01999 252 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
Bda01g01999 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Bda01g01999 252 MobiDBLite consensus disorder prediction 145 166 - -
Bda01g01999 252 Pfam PHD-finger 199 248 IPR019787 -
Bda01g01999 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Bda01g01999 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bda01g01999 252 SMART PHD_3 198 246 IPR001965 -
Bda01g01999 252 Coils Coil 167 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01999 Bda-Chr1:56332600 Bda06g00180 Bda-Chr6:2481505 1.69E-115 dispersed
Bda02g00379 Bda-Chr2:44172210 Bda01g01999 Bda-Chr1:56332600 1.09E-125 transposed
Bda13g01589 Bda-Chr13:39420346 Bda01g01999 Bda-Chr1:56332600 7.11E-130 transposed
Bda01g01999 Bda-Chr1:56332600 Bda11g01029 Bda-Chr11:10012004 9.40E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15492 PF12165 Alfin 1.40E-69 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01999 - - cpap:110817645 444.891