Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01999 | ATGGACGGAGCAGCTGCTTACAACCCCCGAACTGTGGAAGAGGTTTTCAAGGATTTTAGGGGCCGTCGAGCCGGCATGATTAAAGCTCTCACCACTGACGTCGAAGAATTTTATCAGCGGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGCAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCTCCGGAGCTGCCCGAGCCTGCATTAGGTATTAACTTTGCAAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCATGGTTACTTTCAGTGGCTTTTTATTTTGGTTCCAGATTTGGATTCGATAAAGCTGACAGGAAACGTCTGTTCACGATGATAAATGATTTACCCACAATATTCGAGGTGGTGACCGGAAGTGTGAAGAAACAGGGAAAGGAGAAGTCATCAATTTCAAATCATAGCAGAAATAAATCTAAGTCAGGCTCAAAAGGGGTAAGTGAAAATATATTATCCTTGTCTGCAACTATGGAAGAAGAGTTGGAAGAAGCTGAGGAGGAGGAGGAAGAGGAGGAGGAGCATGGGGAGACCTTATGTGGGGCATGTGGAGATAACTATGCATCGGACGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCACGGCAAATGCGTAAAGATAACTCCAGCAAAGGCTGAGCACATCAAGCAATATAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGGCCCTGA | 759 | 45.98 | MDGAAAYNPRTVEEVFKDFRGRRAGMIKALTTDVEEFYQRCDPEKENLCLYGLPNEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDLPTIFEVVTGSVKKQGKEKSSISNHSRNKSKSGSKGVSENILSLSATMEEELEEAEEEEEEEEEHGETLCGACGDNYASDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSCSNKRARP | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56332600 | 56335684 | - | Bda004318.1 | Bda01g01999 | 1999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01999 | 252 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 3 | 252 | - | - | |
Bda01g01999 | 252 | CDD | PHD_AL_plant | 198 | 248 | IPR044104 | - | |
Bda01g01999 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 247 | IPR013083 | - | |
Bda01g01999 | 252 | ProSiteProfiles | Zinc finger PHD-type profile. | 196 | 248 | IPR019787 | - | |
Bda01g01999 | 252 | PANTHER | CPG BINDING PROTEIN | 3 | 252 | IPR045104 | GO:0006355|GO:0042393 | |
Bda01g01999 | 252 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 249 | IPR011011 | - | |
Bda01g01999 | 252 | MobiDBLite | consensus disorder prediction | 145 | 166 | - | - | |
Bda01g01999 | 252 | Pfam | PHD-finger | 199 | 248 | IPR019787 | - | |
Bda01g01999 | 252 | ProSitePatterns | Zinc finger PHD-type signature. | 199 | 245 | IPR019786 | - | |
Bda01g01999 | 252 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
Bda01g01999 | 252 | SMART | PHD_3 | 198 | 246 | IPR001965 | - | |
Bda01g01999 | 252 | Coils | Coil | 167 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01999 | Bda-Chr1:56332600 | Bda06g00180 | Bda-Chr6:2481505 | 1.69E-115 | dispersed | |
Bda02g00379 | Bda-Chr2:44172210 | Bda01g01999 | Bda-Chr1:56332600 | 1.09E-125 | transposed | |
Bda13g01589 | Bda-Chr13:39420346 | Bda01g01999 | Bda-Chr1:56332600 | 7.11E-130 | transposed | |
Bda01g01999 | Bda-Chr1:56332600 | Bda11g01029 | Bda-Chr11:10012004 | 9.40E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15492 | PF12165 | Alfin | 1.40E-69 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01999 | - | - | cpap:110817645 | 444.891 |