Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02031 ATGATGCTCGGTGAACCCTACAGTTCCGGCGTCCCGACGTGGTCGGTAAGCGATTACGATTCGGTGACTGATATTTTCTCTCCTCTTGGAAGATCTGTCCGCTGCCACTGCAATGCGAATGGAGGAGACTACTCTCCTCAAGAAGCTTACACGGGACTGCAGCGATACTTGCCGTCGAATGAACGGGACAGCGATATTTCTGGTCGGGAAATGGATTCTACCGTCGACGCCTACTCATGCGACCAGTTCCGGATGTTTGAGTTCAAGGTGAGGAGGTGTGCCAGAGGAAGGTCTCATGATTGGATTGAGTGTCCGTACGCTCATCCGGGAGAGAAGGCTCGCCGGAGAGATCCGACGAAGTATCACTACTCTGGTACTGCATGTCCGGATTTTCGAAAAGGAAGTTGCAAGAAAGGTGATTCGTGCGAGTTCTCTCATGGTGTTTTCGAGTGCTGGCTTCACCCGGCGCGTTACCGGACTCAGCCTTGCAAAGACGGAACGAGTTGCCGGCGACGGGTTTGTTTCTTCGCTCACACGGCGGAGCAACTTCGAGTTTTACCTCATCAGAGTCCGAGGAGTCCAAACGCTGCTGCTTACTCCTACGACACTTCACCTCTCCGGCATGCCATTGAGGCGTCGAGTGCAAAAAATTTAACGTTTTTGTCTTCTCCGACGAGTTCACCCCCGATGACTCCTCAGGCAGAATCTCCGCCTATGTCGCCAATGGCTCAGTCGCTTAGCCGGTCTTTCGGATTGAATCCAGTAGGAGAAATGGTGGCTTCTCTTCGAAACCTCCAGATTAGCAAATTAAAGTACCTTCCCTCTGCTTGGAATGCCCAAATAGGATCTCCGAGAGGTTCGATCCTTCGACCTGACGGGTGCAGCCTACCTGCGACGCCAACTCGAGCTTCTCCTCGTTCCGTTAATGGCGGATATGTTGATATCTGGGACCAAACTGTGGAGGAGCCAGCGATGGAGAGGGTAGAATCAGGGAGAGGACTCAGAGCTAAAATGTTTGAGAAACTGAGAAAGGAAAACTTCACTAATGAAGCCCATCCCGATTCATCGTCTGCTGCACCGGACGTCGGTTGGATTTCAGAGCTGGTGCAGTAA 1113 52.2 MMLGEPYSSGVPTWSVSDYDSVTDIFSPLGRSVRCHCNANGGDYSPQEAYTGLQRYLPSNERDSDISGREMDSTVDAYSCDQFRMFEFKVRRCARGRSHDWIECPYAHPGEKARRRDPTKYHYSGTACPDFRKGSCKKGDSCEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPHQSPRSPNAAAYSYDTSPLRHAIEASSAKNLTFLSSPTSSPPMTPQAESPPMSPMAQSLSRSFGLNPVGEMVASLRNLQISKLKYLPSAWNAQIGSPRGSILRPDGCSLPATPTRASPRSVNGGYVDIWDQTVEEPAMERVESGRGLRAKMFEKLRKENFTNEAHPDSSSAAPDVGWISELVQ 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56597951 56599063 - Bda004352.1 Bda01g02031 2031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02031 370 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 370 - -
Bda01g02031 370 PANTHER UNKEMPT FAMILY MEMBER 9 370 IPR045234 -
Bda01g02031 370 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Bda01g02031 370 SMART c3hfinal6 157 180 IPR000571 GO:0046872
Bda01g02031 370 Gene3D - 118 189 - -
Bda01g02031 370 MobiDBLite consensus disorder prediction 220 246 - -
Bda01g02031 370 ProSiteProfiles Zinc finger C3H1-type profile. 123 149 IPR000571 GO:0046872
Bda01g02031 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 147 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02031 Bda02g00398 CCT
Bda01g02031 Bda02g00398 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00607 Bda-Chr1:33068489 Bda01g02031 Bda-Chr1:56597951 1.55E-93 dispersed
Bda01g01588 Bda-Chr1:51730347 Bda01g02031 Bda-Chr1:56597951 3.28E-118 dispersed
Bda01g02031 Bda-Chr1:56597951 Bda02g00398 Bda-Chr2:44523605 6.04E-113 dispersed
Bda01g02031 Bda-Chr1:56597951 Bda11g01075 Bda-Chr11:10492883 2.43E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15497 PF00642 zf-CCCH 6.70E-06 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02031 - - jre:109010264 496.508