Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02038 ATGTTTAACTTCAGGACTGCAAGTGGCACCTTTCACGATGGAGATCTATTATTAAACCAGAAAGGCCTGCGGCTTATTTCTGAAGAAAAGGAATCTCGTATTTTTTTTTCTATGTTTCAACAGCATTCGGACAGCAAGGAGCTTGATTGTGATTTCTCACTAGAAGACCTCGAGACTATGAATGTCATCGGAAAAGGAAGTGGTGGTGTTGTACAACTTGTTCGTCATAAATGGCTAGGAAAACTATTTGCTTTAAAGGTTGTCATCCAGATGAACATACAAGAAAATATACGAAAACAGATAGTCCAGGAGTTGAAAATAAATCAAACAGCCCAGTGTCCACAGGTGGTGGTATGCTACCACTCATTCTACCACAATGGGGCTATTTCTCTTGTCCTAGAATACATGGATCGCGGATCTTTGGCGGATGTGATTCGACAAGTGAAAACAATTCTTGAACCATATCTGGCTGTTGTATGTAAACAGGTAGTGTTATTGGGTCTTGTGTACTTGCATCATGAACGACATGTCATACATAGGGACATAAAGCCATCCAATCTGCTAGTGAACCACAAAGGGGAGGTGAAAATTACTGATTTTGGTGTTAGTGCTGTGCTAGCTAGCTCTATGGGCCAGCGAGATACTTTTGTAGGAACTTACAACTACATGGCGCCAGAGAGAATTAGTGGGAGTACCTATGACTGCAGTAGCGATATTTGGAGCTTAGGCATGGTGGTACTTGAGTGTGCTATAGGACGGTTTCCCTACACGCAATCTGAAGATCAGAAGAGTTGGCCAAGCTTTTATGAGCTTTTAACAGCAATTGTGTCAAGCCCACCTCCCTCTGCTCCACCAGATCAGTTCTCTCCAGAATTTTGTTCATTTATATCTGCTTGCATTCAAAAGGAACCGCATAGGAGATCATCATCTTTGGACCTCTTGGGTCATCCTTTCATCAAAAAGTTTGAAAACAAAGACATTGATCTGGGAATACTTGTTGGCAGCTTGGAACCACCTTTAAATTTCTCCAGGTAG 1035 41.84 MFNFRTASGTFHDGDLLLNQKGLRLISEEKESRIFFSMFQQHSDSKELDCDFSLEDLETMNVIGKGSGGVVQLVRHKWLGKLFALKVVIQMNIQENIRKQIVQELKINQTAQCPQVVVCYHSFYHNGAISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVVLLGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSTYDCSSDIWSLGMVVLECAIGRFPYTQSEDQKSWPSFYELLTAIVSSPPPSAPPDQFSPEFCSFISACIQKEPHRRSSSLDLLGHPFIKKFENKDIDLGILVGSLEPPLNFSR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56647120 56656777 + Bda004360.1 Bda01g02038 2038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02038 344 CDD PKc_MAPKK_plant_like 55 324 - -
Bda01g02038 344 ProSiteProfiles Protein kinase domain profile. 57 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02038 344 SMART serkin_6 57 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02038 344 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Bda01g02038 344 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 3 343 - -
Bda01g02038 344 Pfam Protein kinase domain 58 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g02038 344 Gene3D Transferase(Phosphotransferase) domain 1 139 334 - -
Bda01g02038 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Bda01g02038 344 Gene3D Phosphorylase Kinase; domain 1 24 137 - -
Bda01g02038 344 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 343 - -
Bda01g02038 344 SUPERFAMILY Protein kinase-like (PK-like) 55 327 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02038 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - zju:107432800 582.022
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02038 Bda-Chr1:56647120 Bda11g01036 Bda-Chr11:10100335 1.86E-142 dispersed
Bda07g01729 Bda-Chr7:32401743 Bda01g02038 Bda-Chr1:56647120 1.06E-70 transposed
Bda01g02038 Bda-Chr1:56647120 Bda02g00383 Bda-Chr2:44203814 3.46E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda02g00383 CCT 27 338 MAP Kinase Kinase Gene Family AT4G26070 66.1 2.0e-123 439.1
Bda11g01036 CCT 3 334 MAP Kinase Kinase Gene Family AT4G26070 61.7 1.0e-119 426.8
Bda01g02038 . 4 340 MAP Kinase Kinase Gene Family AT4G26070 55.0 2.9e-103 372.1
Bda02g00383 CCT 1 312 MAP Kinase Kinase Gene Family AT4G29810 65.8 1.2e-125 446.4
Bda11g01036 CCT 4 307 MAP Kinase Kinase Gene Family AT4G29810 66.1 8.7e-116 413.7
Bda01g02038 . 5 314 MAP Kinase Kinase Gene Family AT4G29810 59.0 1.9e-102 369.4
Bda07g01729 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 6.2e-227 783.5
Bda11g01809 . 5 314 MAP Kinase Kinase Gene Family AT1G51660 52.0 7.8e-86 314.3
Bda11g01809 . 43 312 MAP Kinase Kinase Gene Family AT3G21220 56.3 1.1e-84 310.5
Bda01g02038 . 3 344 MAP Kinase Kinase Gene Family AT5G56580 82.5 2.2e-157 552.0
Bda11g01036 CCT 6 322 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.1e-108 388.3
Bda02g00383 CCT 7 327 MAP Kinase Kinase Gene Family AT5G56580 57.0 2.7e-107 385.6
Bda11g01809 . 1 310 MAP Kinase Kinase Gene Family AT1G18350 62.6 1.9e-109 392.5
Bda11g01809 . 1 313 MAP Kinase Kinase Gene Family AT1G73500 65.5 8.5e-118 420.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69468 PF00069 Pkinase 6.10E-64 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g02038 Bda_Chr01 FPKM 4.024825 4.602215 9.991484 9.678605 13.988381 9.892343 14.109716 5.190397 4.902057