Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02052 ATGTTCAACTCAGCTACTGAGTCAAGTACCACCCACTCGTCTTCCTCCCCGAGCTCTTCTTCTTCTTCTTCTTCAGGACTCGACCTGAAGAAGAGTAAGCGAACCCGAGATAGTAACGGTAAACACCCGGTTTACAGAGGGGTCCGAATGCGGGTTTGGGGAAAATGGGTATCCGAAATCCGAGAACCCAGAAAGAAGAGCCGGATTTGGCTCGGAACTTTTTCGACGCCGGAAATGGCGGCCAGGGCTCATGATGTCGCTGCTTTAAGCATCAAGGGGAAATCGGCGATCCTCAACTTTCCAGAAATGGCAGGAATACTTCCTCGGCCATCTTCGAACTCTCCCCGTGACATTCAAGCCGCCGCTGCTCTGGCCGCTTCAATGGAGGTTCTTCCGGCGACTCCTCCAGAATCGTCACATCCCCCGACGACTGAACCGTCATCTTCATCATCCTCATTCAACGTTCCATCCCCGGAGGAACTTAGTGAGATAGTTCAACTTCCTAGTTTGGGAACGAGCTATGAATCGCCAGAGTCGCAATTCGTGCTACATGACTCGGAAGATCGGTGGCTTTACACAGAGACTTACGAGTACTTCAGCGATCAGATATCAATGGCGGAGACAGAAAGCTTCGATTTTTTCTTCTGGCGCCATTAA 657 50.99 MFNSATESSTTHSSSSPSSSSSSSSGLDLKKSKRTRDSNGKHPVYRGVRMRVWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGKSAILNFPEMAGILPRPSSNSPRDIQAAAALAASMEVLPATPPESSHPPTTEPSSSSSSFNVPSPEELSEIVQLPSLGTSYESPESQFVLHDSEDRWLYTETYEYFSDQISMAETESFDFFFWRH 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56783535 56784191 - Bda004378.1 Bda01g02052 2052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02052 218 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Bda01g02052 218 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Bda01g02052 218 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Bda01g02052 218 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Bda01g02052 218 MobiDBLite consensus disorder prediction 29 44 - -
Bda01g02052 218 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Bda01g02052 218 MobiDBLite consensus disorder prediction 1 28 - -
Bda01g02052 218 MobiDBLite consensus disorder prediction 132 156 - -
Bda01g02052 218 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Bda01g02052 218 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Bda01g02052 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 201 - -
Bda01g02052 218 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Bda01g02052 218 MobiDBLite consensus disorder prediction 1 44 - -
Bda01g02052 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02052 Bda-Chr1:56783535 Bda11g01093 Bda-Chr11:10692654 3.99E-93 dispersed
Bda01g02051 Bda-Chr1:56777298 Bda01g02052 Bda-Chr1:56783535 4.58E-98 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15500 PF00847 AP2 2.30E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02052 K09286 - tcc:18588535 226.098