Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02058 TCGAATTTTAATTCGATGGGTGAAGAAGAGGCGGCTGATTCAGTTCAAGAAAAGACTCAGCCAGATGGTGCGACATCCTGTGACGCTGCTTCGTCAGAAGTACCAGCTAAAAAGCTCGCGAGGCAGCTGGACTTTACGGGCTTAGGGAGGATGTCCGCGAGTGTAGTCTTGCCTGAGCATCCTCAGCCTCAATCTCAGGTACAGTTGCAGTCGCGTTCTCAGTTGCCAGCTGTGGTGGCACTGGCGCCCCCGAGCCAGCCTCAGTTGCAGCCGCCTCAAAAACCAGACTCCCCAAAGTCAAGGCCACGATCCAACGTTGAAGTAAAAGATTGTACTCCAAAGAAGCAAAAACAGTGTAATTGTAAACACTCACGGTGCTTAAAGTTGTATTGTGAGTGTTTTGCATCTGGAATATATTGCGATGGTTGTAACTGCATTAACTGCTATAATAATGTTGAAAATGAAGCTGCTAGGCGTGAAGCAGTTGAATCCACTTTGGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCACACGGGACACGTGATAATAGGGAAGAAGCTGGAGAGGTTCTAATGTTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGGTGCCTAAAAAAGTACTGTGAGTGTTTCCAGGCCAACATTCTCTGCTCTGACAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGGCAAGCTCTATTCCATGGGGACCATGGAAATAACATTGCATGTATACAGCAGGCAGCTAATGCTGCTATAACTGGAGCTATTGGATCCTCGGGATATGCATCCCCTCCGGTGTCAAAGAAACGGAAAGGACATGAGCTTTTCTTTGGGCCAACGCCCAAAGATTCGTCCATTCATAGGCTGGCACAATTTCAACAGGCAAATCAAATTAGAACTTCTGCGGCCTCCTTGCCTTCAATCCCTGTTACTCGAGCTGGTTCCAATGCAGCATTGGCCCCCTCAAAGTTCACTTACAGATCATTATTAGCAGACATCATCCAACCACAGGATTCGATGGAGCTCTGCTCTGTATTAGTTGTTCTGTCAAATCAAAGAAATGCTACAGAAAGGGGGGCTGACAATCAAACAGAAACTCGCCTTGCTTCCGCAACTCATGAGAGGCTGCAGAGTCAAAAGGAATCTGTGGAGAAAGCTAATAAGCTCATAACTTTTGGCGAGATAAAAGGCAAGCTATTTCTTTTTCCCTTCATCCCGTGA 1263 46.24 SNFNSMGEEEAADSVQEKTQPDGATSCDAASSEVPAKKLARQLDFTGLGRMSASVVLPEHPQPQSQVQLQSRSQLPAVVALAPPSQPQLQPPQKPDSPKSRPRSNVEVKDCTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVESTLERNPNAFRPKIASSPHGTRDNREEAGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNIACIQQAANAAITGAIGSSGYASPPVSKKRKGHELFFGPTPKDSSIHRLAQFQQANQIRTSAASLPSIPVTRAGSNAALAPSKFTYRSLLADIIQPQDSMELCSVLVVLSNQRNATERGADNQTETRLASATHERLQSQKESVEKANKLITFGEIKGKLFLFPFIP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56823876 56827829 + Bda004384.1 Bda01g02058 2058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02058 420 PANTHER TESMIN/TSO1-RELATED 30 90 IPR028307 -
Bda01g02058 420 MobiDBLite consensus disorder prediction 58 75 - -
Bda01g02058 420 MobiDBLite consensus disorder prediction 1 36 - -
Bda01g02058 420 MobiDBLite consensus disorder prediction 369 394 - -
Bda01g02058 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 202 236 IPR005172 -
Bda01g02058 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 116 151 IPR005172 -
Bda01g02058 420 ProSiteProfiles CRC domain profile. 115 239 IPR005172 -
Bda01g02058 420 PANTHER TESMIN/TSO1-RELATED 91 394 IPR028307 -
Bda01g02058 420 SMART CXC_2 114 154 IPR033467 -
Bda01g02058 420 SMART CXC_2 199 240 IPR033467 -
Bda01g02058 420 MobiDBLite consensus disorder prediction 54 109 - -
Bda01g02058 420 MobiDBLite consensus disorder prediction 369 390 - -
Bda01g02058 420 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 30 90 - -
Bda01g02058 420 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 91 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02058 - - - mnt:21385513 553.518
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g02058 Bda11g01097 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02058 Bda-Chr1:56823876 Bda13g00106 Bda-Chr13:1467741 1.14E-30 dispersed
Bda01g02058 Bda-Chr1:56823876 Bda11g01097 Bda-Chr11:10752029 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g00106 BCT,CCT,ECH 24 406 CPP Transcription Factor Family AT3G22780 51.6 1.4e-88 324.3
Bda13g00106 BCT,CCT,ECH 7 409 CPP Transcription Factor Family AT4G14770 52.4 2.2e-91 333.6
Bda11g01097 BCT 97 515 CPP Transcription Factor Family AT2G20110 59.3 9.3e-128 454.1
Bda01g02058 BCT 6 401 CPP Transcription Factor Family AT2G20110 55.8 1.9e-112 403.3
Bda13g00106 BCT,CCT,ECH 105 258 CPP Transcription Factor Family AT3G04850 63.2 6.1e-54 209.1
Bda01g02058 BCT 85 361 CPP Transcription Factor Family AT5G25790 50.3 1.0e-74 277.7
Bda11g01097 BCT 102 521 CPP Transcription Factor Family AT4G29000 61.5 2.4e-140 496.1
Bda01g02058 BCT 28 391 CPP Transcription Factor Family AT4G29000 59.3 1.6e-120 430.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15501 PF03638 TCR 1.90E-12 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g02058 Bda_Chr01 FPKM 20.264265 21.98513 24.291679 24.395462 26.981598 25.870092 27.552725 9.607868 8.901868