Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g02058 TCGAATTTTAATTCGATGGGTGAAGAAGAGGCGGCTGATTCAGTTCAAGAAAAGACTCAGCCAGATGGTGCGACATCCTGTGACGCTGCTTCGTCAGAAGTACCAGCTAAAAAGCTCGCGAGGCAGCTGGACTTTACGGGCTTAGGGAGGATGTCCGCGAGTGTAGTCTTGCCTGAGCATCCTCAGCCTCAATCTCAGGTACAGTTGCAGTCGCGTTCTCAGTTGCCAGCTGTGGTGGCACTGGCGCCCCCGAGCCAGCCTCAGTTGCAGCCGCCTCAAAAACCAGACTCCCCAAAGTCAAGGCCACGATCCAACGTTGAAGTAAAAGATTGTACTCCAAAGAAGCAAAAACAGTGTAATTGTAAACACTCACGGTGCTTAAAGTTGTATTGTGAGTGTTTTGCATCTGGAATATATTGCGATGGTTGTAACTGCATTAACTGCTATAATAATGTTGAAAATGAAGCTGCTAGGCGTGAAGCAGTTGAATCCACTTTGGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCACACGGGACACGTGATAATAGGGAAGAAGCTGGAGAGGTTCTAATGTTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGGTGCCTAAAAAAGTACTGTGAGTGTTTCCAGGCCAACATTCTCTGCTCTGACAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGGCAAGCTCTATTCCATGGGGACCATGGAAATAACATTGCATGTATACAGCAGGCAGCTAATGCTGCTATAACTGGAGCTATTGGATCCTCGGGATATGCATCCCCTCCGGTGTCAAAGAAACGGAAAGGACATGAGCTTTTCTTTGGGCCAACGCCCAAAGATTCGTCCATTCATAGGCTGGCACAATTTCAACAGGCAAATCAAATTAGAACTTCTGCGGCCTCCTTGCCTTCAATCCCTGTTACTCGAGCTGGTTCCAATGCAGCATTGGCCCCCTCAAAGTTCACTTACAGATCATTATTAGCAGACATCATCCAACCACAGGATTCGATGGAGCTCTGCTCTGTATTAGTTGTTCTGTCAAATCAAAGAAATGCTACAGAAAGGGGGGCTGACAATCAAACAGAAACTCGCCTTGCTTCCGCAACTCATGAGAGGCTGCAGAGTCAAAAGGAATCTGTGGAGAAAGCTAATAAGCTCATAACTTTTGGCGAGATAAAAGGCAAGCTATTTCTTTTTCCCTTCATCCCGTGA 1263 46.24 SNFNSMGEEEAADSVQEKTQPDGATSCDAASSEVPAKKLARQLDFTGLGRMSASVVLPEHPQPQSQVQLQSRSQLPAVVALAPPSQPQLQPPQKPDSPKSRPRSNVEVKDCTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVESTLERNPNAFRPKIASSPHGTRDNREEAGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNIACIQQAANAAITGAIGSSGYASPPVSKKRKGHELFFGPTPKDSSIHRLAQFQQANQIRTSAASLPSIPVTRAGSNAALAPSKFTYRSLLADIIQPQDSMELCSVLVVLSNQRNATERGADNQTETRLASATHERLQSQKESVEKANKLITFGEIKGKLFLFPFIP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56823876 56827829 + Bda004384.1 Bda01g02058 2058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g02058 420 PANTHER TESMIN/TSO1-RELATED 30 90 IPR028307 -
Bda01g02058 420 MobiDBLite consensus disorder prediction 58 75 - -
Bda01g02058 420 MobiDBLite consensus disorder prediction 1 36 - -
Bda01g02058 420 MobiDBLite consensus disorder prediction 369 394 - -
Bda01g02058 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 202 236 IPR005172 -
Bda01g02058 420 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 116 151 IPR005172 -
Bda01g02058 420 ProSiteProfiles CRC domain profile. 115 239 IPR005172 -
Bda01g02058 420 PANTHER TESMIN/TSO1-RELATED 91 394 IPR028307 -
Bda01g02058 420 SMART CXC_2 114 154 IPR033467 -
Bda01g02058 420 SMART CXC_2 199 240 IPR033467 -
Bda01g02058 420 MobiDBLite consensus disorder prediction 54 109 - -
Bda01g02058 420 MobiDBLite consensus disorder prediction 369 390 - -
Bda01g02058 420 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 30 90 - -
Bda01g02058 420 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 91 394 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02058 Bda11g01097 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02058 Bda-Chr1:56823876 Bda13g00106 Bda-Chr13:1467741 1.14E-30 dispersed
Bda01g02058 Bda-Chr1:56823876 Bda11g01097 Bda-Chr11:10752029 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15501 PF03638 TCR 1.90E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g02058 - - mnt:21385513 553.518